Evidence map›Paper›PMID 25082345›Full record

ArticleeLife2014

Structural basis of nucleoside and nucleoside drug selectivity by concentrative nucleoside transporters.

Zachary Lee Johnson, Jun-Ho Lee, Kiyoun Lee, Minhee Lee, Do-Yeon Kwon, Jiyong Hong, Seok-Yong Lee

Abstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Elucidation of the Gemcitabine Transporters ofInternational journal of molecular sciences · 2024
    Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. The Structure and Mechanism of Drug Transporters.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Elevator-type mechanisms of membrane transport.Biochemical Society transactions · 2020
    Review
  17. Survey of ribose ring pucker of signaling nucleosides and nucleotides.Nucleosides, nucleotides & nucleic acids · 2020
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zachary Lee JohnsonDepartment of Biochemistry, Duke University Medical Center, Durham, United States.
Jun-Ho LeeDepartment of Biochemistry, Duke University Medical Center, Durham, United States.
Kiyoun LeeDepartment of Chemistry, Duke University, Durham, United States.
Minhee LeeDepartment of Chemistry, Duke University, Durham, United States.
Do-Yeon KwonDepartment of Chemistry, Duke University, Durham, United States.
Jiyong HongDepartment of Chemistry, Duke University, Durham, United States Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, United States.
Seok-Yong LeeDepartment of Biochemistry, Duke University Medical Center, Durham, United States sylee@biochem.duke.edu.

Funding

Structure and Function of Concentrative Nucleoside TransportersR01GM100984 · NIGMS · DUKE UNIVERSITY · PI LEE, SEOK-YONG · 2013 to 2016
$1.2M
NIGMS NIH HHS R01 GM100984NIGMS NIH HHS R01GM100984
6 · The paper itself

Abstract

Concentrative nucleoside transporters (CNTs) are responsible for cellular entry of nucleosides, which serve as precursors to nucleic acids and act as signaling molecules. CNTs also play a crucial role in the uptake of nucleoside-derived drugs, including anticancer and antiviral agents. Understanding how CNTs recognize and import their substrates could not only lead to a better understanding of nucleoside-related biological processes but also the design of nucleoside-derived drugs that can better reach their targets. Here, we present a combination of X-ray crystallographic and equilibrium-binding studies probing the molecular origins of nucleoside and nucleoside drug selectivity of a CNT from Vibrio cholerae. We then used this information in chemically modifying an anticancer drug so that it is better transported by and selective for a single human CNT subtype. This work provides proof of principle for utilizing transporter structural and functional information for the design of compounds that enter cells more efficiently and selectively.

Indexed as

AnimalsBacterial ProteinsBinding SitesBiological TransportCrystallography, X-RayDeoxycytidineFemaleGemcitabineGene ExpressionHumansKineticsMembrane Transport ProteinsMolecular Docking SimulationNucleoside Transport ProteinsOocytesProtein BindingBacterial Proteinscif nucleoside transporterDeoxycytidineGemcitabineMembrane Transport ProteinsNucleoside Transport ProteinsRecombinant ProteinsRibavirinUridineanticancer drugsantiviral drugsdrug deliverymembrane transportnucleosideVibrio cholerae

Identifiers

PMID25082345
PMCPMC4139061

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.