Evidence map›Paper›PMID 25082344›Full record

ArticleeLife2014

H3K27 modifications define segmental regulatory domains in the Drosophila bithorax complex.

Sarah K Bowman, Aimee M Deaton, Heber Domingues, Peggy I Wang, Ruslan I Sadreyev, Robert E Kingston, Welcome Bender

Abstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed.

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  9. Review
  10. Schlank orchestrates insect developmental transition by switching H3K27 acetylation to trimethylation in the prothoracic gland.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
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  15. eLife · 2024
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  16. Article
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  18. Article
  19. The N-Terminal Part ofInternational journal of molecular sciences · 2023
    Article
  20. Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sarah K BowmanDepartment of Molecular Biology, Massachusetts General Hospital, Boston, United States Department of Genetics, Harvard Medical School, Boston, United States.
Aimee M DeatonDepartment of Molecular Biology, Massachusetts General Hospital, Boston, United States Department of Genetics, Harvard Medical School, Boston, United States.
Heber DominguesDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, United States.
Peggy I WangDepartment of Molecular Biology, Massachusetts General Hospital, Boston, United States Department of Genetics, Harvard Medical School, Boston, United States.
Ruslan I SadreyevDepartment of Molecular Biology, Massachusetts General Hospital, Boston, United States Department of Pathology, Harvard Medical School, Boston, United States.
Robert E KingstonDepartment of Molecular Biology, Massachusetts General Hospital, Boston, United States Department of Genetics, Harvard Medical School, Boston, United States kingston@molbio.mgh.harvard.edu.
Welcome BenderDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, United States.

Funding

ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI CHRISTOPHER P DUGGAN · 1994 to 2026
$31.6M
Maintenance of Gene ExpressionR01GM043901 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI KINGSTON, ROBERT · 1991 to 2018
$10.7M
Transcription Factor Interactions with NucleosomesR37GM048405 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI KINGSTON, ROBERT · 2009 to 2018
$3.9M
MOLECULAR GENETICS OF TWO LOCIR01GM028630 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI BENDER, WELCOME · 1985 to 2017
$3.8M
NIDDK NIH HHS P30 DK040561NIGMS NIH HHS GM28630NIGMS NIH HHS GM43901NIGMS NIH HHS R01 GM028630NIGMS NIH HHS R01 GM043901NIGMS NIH HHS R37 GM048405
6 · The paper itself

Abstract

The bithorax complex (BX-C) in Drosophila melanogaster is a cluster of homeotic genes that determine body segment identity. Expression of these genes is governed by cis-regulatory domains, one for each parasegment. Stable repression of these domains depends on Polycomb Group (PcG) functions, which include trimethylation of lysine 27 of histone H3 (H3K27me3). To search for parasegment-specific signatures that reflect PcG function, chromatin from single parasegments was isolated and profiled. The H3K27me3 profiles across the BX-C in successive parasegments showed a 'stairstep' pattern that revealed sharp boundaries of the BX-C regulatory domains. Acetylated H3K27 was broadly enriched across active domains, in a pattern complementary to H3K27me3. The CCCTC-binding protein (CTCF) bound the borders between H3K27 modification domains; it was retained even in parasegments where adjacent domains lack H3K27me3. These findings provide a molecular definition of the homeotic domains, and implicate precisely positioned H3K27 modifications as a central determinant of segment identity.

Indexed as

Epigenesis, GeneticGenes, HomeoboxAcetylationAnimalsBody PatterningCCCTC-Binding FactorChromatinDrosophila melanogasterDrosophila ProteinsEmbryo, NonmammalianFemaleGene Expression Regulation, DevelopmentalHistonesLysineMalePolycomb Repressive Complex 1CCCTC-Binding FactorChromatinCTCF protein, DrosophilaDrosophila ProteinsHistonesLysinePc protein, DrosophilaPolycomb Repressive Complex 1Repressor Proteinsbithorax complexchromatinCTCFPolycomb

Identifiers

PMID25082344
PMCPMC4139060

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.