Evidence map›Paper›PMID 25079319›Full record

ArticleNature2014

RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer.

Andrew L Wolfe, Kamini Singh, Yi Zhong, Philipp Drewe, Vinagolu K Rajasekhar, Viraj R Sanghvi, Konstantinos J Mavrakis, Man Jiang, Justine E Roderick, Joni Van der Meulen and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 406 papers.

0numbers the graph read from it
0cells of the map it votes in
406citing papers in PubMed
22.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

406 citing papers in PubMed, 621 citations in OpenAlex.

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346 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 3 countries.

Andrew L Wolfe1] Cancer Biology and Genetics, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA [2] Weill Cornell Graduate School of Medical Sciences, New York, New York 10065, USA [3].
Kamini Singh1] Cancer Biology and Genetics, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA [2].
Yi ZhongComputational Biology Department, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Philipp DreweComputational Biology Department, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Vinagolu K RajasekharStem Cell Center and Developmental Biology Program, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Viraj R SanghviCancer Biology and Genetics, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Konstantinos J Mavrakis1] Cancer Biology and Genetics, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA [2] Novartis, Cambridge, Massachusetts 02139, USA (K.J.M.); The University of Arizona Cancer Center, Tucson, Arizona 85719, USA (J.H.S.).
Man JiangCancer Biology and Genetics, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Justine E RoderickDepartment of Cancer Biology, University of Massachusetts Medical School, Worcester, Massachusetts 01605 USA.
Joni Van der Meulen1] Cancer Biology and Genetics, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA [2] Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, B-9000 Ghent, Belgium.
Jonathan H Schatz1] Cancer Biology and Genetics, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA [2] Department of Medicine, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA [3] Novartis, Cambridge, Massachusetts 02139, USA (K.J.M.); The University of Arizona Cancer Center, Tucson, Arizona 85719, USA (J.H.S.).
Christina M RodrigoDepartment of Chemistry, Center for Chemical Methodology and Library Development, Boston University, Boston, Massachusetts 02215, USA.
Chunying ZhaoCancer Biology and Genetics, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Pieter RondouCenter for Medical Genetics, Ghent University Hospital, De Pintelaan 185, B-9000 Ghent, Belgium.
Elisa de StanchinaMolecular Pharmacology Program, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Julie Teruya-FeldsteinDepartment of Pathology, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Michelle A KelliherDepartment of Cancer Biology, University of Massachusetts Medical School, Worcester, Massachusetts 01605 USA.
Frank SpelemanCenter for Medical Genetics, Ghent University Hospital, De Pintelaan 185, B-9000 Ghent, Belgium.
John A PorcoDepartment of Chemistry, Center for Chemical Methodology and Library Development, Boston University, Boston, Massachusetts 02215, USA.
Jerry Pelletier1] Department of Biochemistry, McGill University, Montreal, Quebec H3G 1Y6, Canada [2] Department of Oncology, McGill University, Montreal, Quebec H3G 1Y6, Canada [3] The Rosalind and Morris Goodman Cancer Research Center, McGill University, Montreal, Quebec H3G 1Y6, Canada.
Gunnar RätschComputational Biology Department, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Hans-Guido WendelCancer Biology and Genetics, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Memorial Sloan Kettering Cancer Center · USBoston University · USGhent University Hospital · BEUniversity of Massachusetts Chan Medical School · USMcGill University · CA

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
SYNTHESIS OF LIBRARIES--LINEAR/POLYKETIDE/POLYPROPIONATEP50GM067041 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI PORCO, JOHN A. · 2002 to 2012
$23.7M
Biomimetic Synthesis of Complex Natural ProductsR01GM073855 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI PORCO, JOHN A. · 2006 to 2015
$3.2M
The contribution of protein translation to tumorigenesisR01CA142798 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI WENDEL, HANS-GUIDO · 2010 to 2014
$1.9M
CIHR MOP-10653NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA142798NCI NIH HHS R01-CA142798-01NIGMS NIH HHS GM-067041NIGMS NIH HHS GM-073855NIGMS NIH HHS P50 GM067041NIGMS NIH HHS R01 GM073855
6 · The paper itself

Abstract

The translational control of oncoprotein expression is implicated in many cancers. Here we report an eIF4A RNA helicase-dependent mechanism of translational control that contributes to oncogenesis and underlies the anticancer effects of silvestrol and related compounds. For example, eIF4A promotes T-cell acute lymphoblastic leukaemia development in vivo and is required for leukaemia maintenance. Accordingly, inhibition of eIF4A with silvestrol has powerful therapeutic effects against murine and human leukaemic cells in vitro and in vivo. We use transcriptome-scale ribosome footprinting to identify the hallmarks of eIF4A-dependent transcripts. These include 5' untranslated region (UTR) sequences such as the 12-nucleotide guanine quartet (CGG)4 motif that can form RNA G-quadruplex structures. Notably, among the most eIF4A-dependent and silvestrol-sensitive transcripts are a number of oncogenes, superenhancer-associated transcription factors, and epigenetic regulators. Hence, the 5' UTRs of select cancer genes harbour a targetable requirement for the eIF4A RNA helicase.

Indexed as

G-QuadruplexesProtein Biosynthesis5' Untranslated RegionsAnimalsAntineoplastic Agents, PhytogenicBase SequenceBenzofuransCell Line, TumorEpigenesis, GeneticEukaryotic Initiation Factor-4AFemaleHumansMiceMice, Inbred C57BLNucleotide MotifsOncogene Proteins5' Untranslated RegionsAntineoplastic Agents, PhytogenicBenzofuransEukaryotic Initiation Factor-4AOncogene ProteinssilvestrolTranscription FactorsTriterpenes

Identifiers

PMID25079319
PMCPMC4492470
OpenAlexW1965163574

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.