Evidence map›Paper›PMID 25079229›Full record

ArticlePLoS genetics2014

Stage-dependent and locus-specific role of histone demethylase Jumonji D3 (JMJD3) in the embryonic stages of lung development.

Qingtian Li, Helen Y Wang, Iouri Chepelev, Qingyuan Zhu, Gang Wei, Keji Zhao, Rong-Fu Wang

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Aquaporin-5 Dynamic Regulation.International journal of molecular sciences · 2023
    Review
  7. Article
  8. Emerging roles of JMJD3 in cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2022
    Review
  9. Article
  10. Kdm6b Regulates the Generation of Effector CD8Journal of immunology (Baltimore, Md. : 1950) · 2021
    Article
  11. Article
  12. Review
  13. Halogen exposure injury in the developing lung.Annals of the New York Academy of Sciences · 2020
    Review
  14. Article
  15. Review
  16. Article
  17. Exposure of neonatal mice to bromine impairs their alveolar development and lung function.American journal of physiology. Lung cellular and molecular physiology · 2018
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Qingtian LiCenter for Inflammation and Epigenetics, Houston Methodist Research Institute, Houston, Texas, United States of America.
Helen Y WangCenter for Inflammation and Epigenetics, Houston Methodist Research Institute, Houston, Texas, United States of America.
Iouri ChepelevCenter for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.
Qingyuan ZhuCenter for Inflammation and Epigenetics, Houston Methodist Research Institute, Houston, Texas, United States of America.
Gang WeiCAS-MPG Partner Institute for Computational Biology, Shanghai Institutes of Biological Sciences, Chinese Academy of Sciences, Shanghai, China.
Keji ZhaoLaboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, NIH, Bethesda, Maryland, United States of America.
Rong-Fu WangCenter for Inflammation and Epigenetics, Houston Methodist Research Institute, Houston, Texas, United States of America.
Houston Methodist · USChinese Academy of Sciences · CNCincinnati Children's Hospital Medical Center · USNational Heart Lung and Blood Institute · US

Funding

Genome-wide mapping of histone modificationsZIAHL005801 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$24.0M
Epigenetic Regulation of Hematopoietic Stem CellsZIAHL006031 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$16.6M
DNA Sequencing Core (DSC)ZICHL006058 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHU, JUN · 2010 to 2016
$16.6M
Epigenetic Regulation of T cell differentiationZIAHL006030 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$15.3M
Reversal of regulatory T cell function in prostate cancerR01CA121191 · NCI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI WANG, RONGFU · 2006 to 2010
$1.3M
NCI NIH HHS R01 CA09327NCI NIH HHS R01 CA121191
6 · The paper itself

Abstract

Histone demethylases have emerged as important players in developmental processes. Jumonji domain containing-3 (Jmjd3) has been identified as a key histone demethylase that plays a critical role in the regulation of gene expression; however, the in vivo function of Jmjd3 in embryonic development remains largely unknown. To this end, we generated Jmjd3 global and conditional knockout mice. Global deletion of Jmjd3 induces perinatal lethality associated with defective lung development. Tissue and stage-specific deletion revealed that Jmjd3 is dispensable in the later stage of embryonic lung development. Jmjd3 ablation downregulates the expression of genes critical for lung development and function, including AQP-5 and SP-B. Jmjd3-mediated alterations in gene expression are associated with locus-specific changes in the methylation status of H3K27 and H3K4. Furthermore, Jmjd3 is recruited to the SP-B promoter through interactions with the transcription factor Nkx2.1 and the epigenetic protein Brg1. Taken together, these findings demonstrate that Jmjd3 plays a stage-dependent and locus-specific role in the mouse lung development. Our study provides molecular insights into the mechanisms by which Jmjd3 regulates target gene expression in the embryonic stages of lung development.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCell DifferentiationDNA HelicasesJumonji Domain-Containing Histone DemethylasesLungLysineMiceNuclear ProteinsPromoter Regions, GeneticPulmonary Surfactant-Associated Protein BThyroid Nuclear Factor 1Transcription FactorsDNA HelicasesJumonji Domain-Containing Histone DemethylasesKDM6B protein, humanLysineNkx2-1 protein, mouseNuclear ProteinsPulmonary Surfactant-Associated Protein BSmarca4 protein, mouseThyroid Nuclear Factor 1Transcription Factors

Identifiers

PMID25079229
PMCPMC4117460
OpenAlexW2147310171

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.