Evidence map›Paper›PMID 25078917›Full record

ArticleJournal of clinical microbiology2014

Rapid inactivation of Mycobacterium and nocardia species before identification using matrix-assisted laser desorption ionization-time of flight mass spectrometry.

W Michael Dunne, Kirk Doing, Elizabeth Miller, Eric Miller, Erik Moreno, Mehdi Baghli, Sandrine Mailler, Victoria Girard, Alex van Belkum, Parampal Deol

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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  8. Review
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  13. Direct matrix-assisted laser desorption ionisation time-of-flight mass spectrometry identification of mycobacteria from colonies.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2016
    Article
  14. Article
  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

W Michael DunnebioMérieux, Inc., Durham, North Carolina, USA william.dunne@biomerieux.com.
Kirk DoingbioMérieux, Inc., Durham, North Carolina, USA.
Elizabeth MillerbioMérieux, Inc., Durham, North Carolina, USA.
Eric MillerbioMérieux, Inc., Durham, North Carolina, USA.
Erik MorenobioMérieux, Inc., Durham, North Carolina, USA.
Mehdi BaghlibioMérieux, Inc., Durham, North Carolina, USA.
Sandrine MaillerbioMérieux, La Balme Les Grottes, France.
Victoria GirardbioMérieux, La Balme Les Grottes, France.
Alex van BelkumbioMérieux, La Balme Les Grottes, France.
Parampal DeolbioMérieux, Inc., Durham, North Carolina, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification of mycobacteria outside biocontainment facilities requires that the organisms first be rendered inactive. Exposure to 70% ethanol (EtOH) either before or after mechanical disruption was evaluated in order to establish a safe, effective, and rapid inactivation protocol that is compatible with identification of Mycobacterium and Nocardia species using matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS). A combination of 5 min of bead beating in 70% EtOH followed by a 10-min room temperature incubation period was found to be rapidly bactericidal and provided high-quality spectra compared to spectra obtained directly from growth on solid media. The age of the culture, the stability of the refrigerated or frozen lysates, and freeze-thaw cycles did not adversely impact the quality of the spectra or the identification obtained.

Indexed as

DisinfectionEthanolHumansMechanical PhenomenaMicrobial ViabilityMycobacteriumMycobacterium InfectionsNocardiaNocardia InfectionsSpecimen HandlingSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTime FactorsEthanol

Identifiers

PMID25078917
PMCPMC4187772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.