Evidence map›Paper›PMID 25078322›Full record

ArticleAmerican journal of respiratory cell and molecular biology2015

Common polymorphisms in the CD43 gene region are associated with tuberculosis disease and mortality.

Monica Campo, April K Randhawa, Sarah Dunstan, Jeremy Farrar, Maxine Caws, Nguyen Duc Bang, Nguyen Ngoc Lan, Tran Thi Hong Chau, David J Horne, Nguyen Thuong Thuong and 2 more

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory cell and molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. The pathogenesis of tuberculous meningitis.Journal of leukocyte biology · 2019
    Review
  6. Review
  7. Article
  8. Observational
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 4 countries.

Monica Campo1 University of Washington, Seattle, Washington.
April K Randhawa
Sarah Dunstan
Jeremy Farrar
Maxine Caws
Nguyen Duc Bang
Nguyen Ngoc Lan
Tran Thi Hong Chau
David J Horne
Nguyen Thuong Thuong
Guy E Thwaites
Thomas R Hawn
Nuffield Orthopaedic Centre · GBUniversity of Washington · USPham Ngoc Thach Hospital · VNFred Hutch Cancer Center · USUCL Australia · AU

Funding

Innate Immunogenetics & Human InfectionsK24AI089794 · NIAID · UNIVERSITY OF WASHINGTON · PI HAWN, THOMAS R · 2010 to 2014
$746k
NIAID NIH HHS K24 AI089794NIAID NIH HHS K24AI089794Wellcome Trust 089276
6 · The paper itself

Abstract

CD43, a surface glycoprotein, regulates Mycobacterium tuberculosis macrophage binding, replication, and proinflammatory cytokine induction in a murine model. We hypothesized that single-nucleotide polymorphisms (SNPs) in the CD43 gene region are associated with human tuberculosis (TB) susceptibility. We performed a case-population study in discovery (352 TB cases and 382 control subjects) and validation cohorts (339 TB cases and 376 control subjects). We examined whether 11 haplotype-tagging SNPs in the CD43 gene region were associated with tuberculous meningitis (TBM) and pulmonary TB (PTB) in Vietnam. Three SNPs from the CD43 gene region were associated with TB susceptibility with a genotypic model. The association fit a recessive genetic model and was greater for TBM than for PTB (for TBM: rs4788172, odds ratio [OR], 1.64; 95% confidence interval [CI], 1.04-2.59, rs17842268 [OR, 2.20; 95% CI, 1.29-3.76, and rs12596308 [OR, 2.38; 95% CI, 1.47-3.89]). Among TBM cases, rs17842268 was associated with decreased survival (hazard ratio, 2.7; 95% CI, 1.1-6.5; P = 0.011). In addition, rs12596308 and rs17842268 were associated with focal neurologic deficit at TBM presentation. Our data suggest that CD43 polymorphisms are associated with TB susceptibility, disease manifestations, and worse outcomes. To our knowledge, this is the first report that links CD43 genetic variants with susceptibility and outcome from a disease.

Indexed as

Case-Control StudiesGenetic Predisposition to DiseaseHaplotypesHumansLeukosialinMycobacterium tuberculosisPolymorphism, Single NucleotideTuberculosis, MeningealTuberculosis, PulmonaryLeukosialinSPN protein, humanCD43mortalitysingle-nucleotide polymorphismtuberculosistuberculous meningitis

Identifiers

PMID25078322
PMCPMC4370260
OpenAlexW1980622693

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.