Evidence map›Paper›PMID 25078270›Full record

ArticlePloS one2014

Non-coding polymorphisms in nucleotide binding domain 1 in ABCC1 gene associate with transcript level and survival of patients with breast cancer.

Tereza Kunická, Radka Václavíková, Viktor Hlaváč, David Vrána, Václav Pecha, Karel Rauš, Markéta Trnková, Kateřina Kubáčková, Miloslav Ambruš, Ludmila Vodičková and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 1 country.

Tereza KunickáDepartment of Toxicogenomics, National Institute of Public Health, Prague, Czech Republic; 3rd Faculty of Medicine, Charles University, Prague, Czech Republic.
Radka VáclavíkováDepartment of Toxicogenomics, National Institute of Public Health, Prague, Czech Republic.
Viktor HlaváčDepartment of Toxicogenomics, National Institute of Public Health, Prague, Czech Republic; 3rd Faculty of Medicine, Charles University, Prague, Czech Republic.
David VránaDepartment of Toxicogenomics, National Institute of Public Health, Prague, Czech Republic; Department of Oncology, Palacky University Medical School and Teaching Hospital, Olomouc, Czech Republic.
Václav PechaInstitute for the Care for Mother and Child, Prague, Czech Republic.
Karel RaušInstitute for the Care for Mother and Child, Prague, Czech Republic.
Markéta TrnkováBiolab Praha, k.s., Prague, Czech Republic.
Kateřina KubáčkováDepartment of Oncology, Motol University Hospital, Prague, Czech Republic.
Miloslav AmbrušDepartment of Radiotherapy and Oncology, Faculty Hospital Kralovske Vinohrady, Prague, Czech Republic.
Ludmila VodičkováDepartment of Toxicogenomics, National Institute of Public Health, Prague, Czech Republic; Institute of Experimental Medicine, Czech Academy of Sciences, Prague, Czech Republic.
Pavel VodičkaInstitute of Experimental Medicine, Czech Academy of Sciences, Prague, Czech Republic; Institute of Biology and Medical Genetics, 1st Faculty of Medicine, Charles University, Prague, Czech Republic.
Pavel SoučekDepartment of Toxicogenomics, National Institute of Public Health, Prague, Czech Republic.
National Institute of Public Health · CZÚstav pro Péči o Matku a Dítě · CZAeskuLab (Czechia) · CZCharles University · CZCzech Academy of Sciences, Institute of Experimental Medicine · CZPalacký University Olomouc · CZUniversity Hospital in Motol · CZUniversity Hospital Kralovske Vinohrady · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesATP-Binding Cassette (ABC) transporters may cause treatment failure by transporting of anticancer drugs outside of the tumor cells. Multidrug resistance-associated protein 1 coded by the ABCC1 gene has recently been suggested as a potential prognostic marker in breast cancer patients. This study aimed to explore tagged haplotype covering nucleotide binding domain 1 of ABCC1 in relation with corresponding transcript levels in tissues and clinical phenotype of breast cancer patients.

methodsThe distribution of twelve ABCC1 polymorphisms was assessed by direct sequencing in peripheral blood DNA (n = 540).

resultsTumors from carriers of the wild type genotype in rs35623 or rs35628 exhibited significantly lower levels of ABCC1 transcript than those from carriers of the minor allele (p = 0.003 and p = 0.004, respectively). The ABCC1 transcript levels significantly increased in the order CT-GT>CC-GT>CC-GG for the predicted rs35626-rs4148351 diplotype. Chemotherapy-treated patients carrying the T allele in rs4148353 had longer disease-free survival than those with the GG genotype (p = 0.043). On the other hand, hormonal therapy-treated patients with the AA genotype in rs35628 had significantly longer disease-free survival than carriers of the G allele (p = 0.012).

conclusionsTaken together, our study shows that genetic variability in the nucleotide binding domain 1 has a significant impact on the ABCC1 transcript level in the target tissue and may modify survival of breast cancer patients.

Indexed as

Polymorphism, Single NucleotideSurvival AnalysisAgedATP-Binding Cassette, Sub-Family C ProteinsBreast NeoplasmsFemaleHumansMiddle AgedRNA, MessengerATP-Binding Cassette, Sub-Family C Proteinsmultidrug resistance-associated protein 1RNA, Messenger

Identifiers

PMID25078270
PMCPMC4117604
OpenAlexW2057238668

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.