Evidence map›Paper›PMID 25078064›Full record

ArticleToxicological sciences : an official journal of the Society of Toxicology2014

Profiling dose-dependent activation of p53-mediated signaling pathways by chemicals with distinct mechanisms of DNA damage.

Rebecca A Clewell, Bin Sun, Yeyejide Adeleye, Paul Carmichael, Alina Efremenko, Patrick D McMullen, Salil Pendse, O J Trask, Andy White, Melvin E Andersen

Open access · hybridAbstract read
In one paragraph

Article in Toxicological sciences : an official journal of the Society of Toxicology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Influence of Kv11.1 (hERG1) KPflugers Archiv : European journal of physiology · 2021
    Article
  4. Identifying and Characterizing Stress Pathways of Concern for Consumer Safety in Next-Generation Risk Assessment.Toxicological sciences : an official journal of the Society of Toxicology · 2020
    Article
  5. Genetic toxicology in silico protocol.Regulatory toxicology and pharmacology : RTP · 2019
    Article
  6. Article
  7. p53 induction and cell viability modulation by genotoxic individual chemicals and mixtures.Environmental science and pollution research international · 2018
    Article
  8. Article
  9. Bridging the Data Gap FromFrontiers in public health · 2018
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Rebecca A ClewellThe Hamner Institutes for Health Sciences, Research Triangle Park, North Carolina 27709 rclewell@thehamner.org.
Bin SunThe Hamner Institutes for Health Sciences, Research Triangle Park, North Carolina 27709.
Yeyejide AdeleyeUnilever, Safety and Environmental Assurance Centre, Colworth Science Park, Sharnbrook, Bedfordshire, MK44 1LQ, UK.
Paul CarmichaelUnilever, Safety and Environmental Assurance Centre, Colworth Science Park, Sharnbrook, Bedfordshire, MK44 1LQ, UK.
Alina EfremenkoThe Hamner Institutes for Health Sciences, Research Triangle Park, North Carolina 27709.
Patrick D McMullenThe Hamner Institutes for Health Sciences, Research Triangle Park, North Carolina 27709.
Salil PendseThe Hamner Institutes for Health Sciences, Research Triangle Park, North Carolina 27709.
O J TraskThe Hamner Institutes for Health Sciences, Research Triangle Park, North Carolina 27709.
Andy WhiteUnilever, Safety and Environmental Assurance Centre, Colworth Science Park, Sharnbrook, Bedfordshire, MK44 1LQ, UK.
Melvin E AndersenThe Hamner Institutes for Health Sciences, Research Triangle Park, North Carolina 27709.
The Hamner Institutes for Health Sciences · USUnilever (United Kingdom) · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As part of a larger effort to provide proof-of-concept in vitro-only risk assessments, we have developed a suite of high-throughput assays for key readouts in the p53 DNA damage response toxicity pathway: double-strand break DNA damage (p-H2AX), permanent chromosomal damage (micronuclei), p53 activation, p53 transcriptional activity, and cell fate (cell cycle arrest, apoptosis, micronuclei). Dose-response studies were performed with these protein and cell fate assays, together with whole genome transcriptomics, for three prototype chemicals: etoposide, quercetin, and methyl methanesulfonate. Data were collected in a human cell line expressing wild-type p53 (HT1080) and results were confirmed in a second p53 competent cell line (HCT 116). At chemical concentrations causing similar increases in p53 protein expression, p53-mediated protein expression and cellular processes showed substantial chemical-specific differences. These chemical-specific differences in the p53 transcriptional response appear to be determined by augmentation of the p53 response by co-regulators. More importantly, dose-response data for each of the chemicals indicate that the p53 transcriptional response does not prevent micronuclei induction at low concentrations. In fact, the no observed effect levels and benchmark doses for micronuclei induction were less than or equal to those for p53-mediated gene transcription regardless of the test chemical, indicating that p53's post-translational responses may be more important than transcriptional activation in the response to low dose DNA damage. This effort demonstrates the process of defining key assays required for a pathway-based, in vitro-only risk assessment, using the p53-mediated DNA damage response pathway as a prototype.

Indexed as

DNA DamageAnimal Use AlternativesApoptosisCell Culture TechniquesCell CycleCell LineCell SurvivalDose-Response Relationship, DrugHCT116 CellsHigh-Throughput Screening AssaysHumansMicronuclei, Chromosome-DefectiveMutagensNo-Observed-Adverse-Effect LevelRisk AssessmentSignal TransductionMutagensTumor Suppressor Protein p53animal alternativesDNA damage responsedose-responsep53three Rstoxicity pathways

Identifiers

PMID25078064
PMCPMC4226763
OpenAlexW2148193854

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.