Evidence map›Paper›PMID 25076853›Full record

ArticleInternational journal of biological sciences2014

Direct evidence for calcineurin binding to the exon-7 loop of the sodium-bicarbonate cotransporter NBCn1.

Harindarpal S Gill, Eric D Roush, Lauren Dutcher, Samir Patel

Open access · goldAbstract read
In one paragraph

Article in International journal of biological sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Review
  3. Calcineurin inhibitors: a double-edged sword.American journal of physiology. Renal physiology · 2021
    Review
  4. Acid-base regulation and sensing: Accelerators and brakes in metabolic regulation of cerebrovascular tone.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2018
    Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Harindarpal S Gill1. Department of Medicine, The George Washington University, Washington, DC 20052 ; 2. Division of Renal Diseases and Hypertension, The George Washington Medical Faculty Associates, Washington, DC 20037.
Eric D Roush3. GE Healthcare, Piscataway, NJ 08554.
Lauren Dutcher4. Hospital of University of Pennsylvania, Philadelphia, PA 19104.
Samir Patel2. Division of Renal Diseases and Hypertension, The George Washington Medical Faculty Associates, Washington, DC 20037.
Washington University Medical Center · USGeneral Electric (Spain) · ESHospital of the University of Pennsylvania · US

Funding

Structure-function studies of the dimerization of the N-terminal domain of NBCe1-K01DK082646 · NIDDK · GEORGE WASHINGTON UNIVERSITY · PI GILL, HARRY SINGH · 2009 to 2014
$704k
NIDDK NIH HHS K01 DK082646NIDDK NIH HHS K01DK082646
6 · The paper itself

Abstract

The NaHCO3 cotransporter NBCn1 plays a role in neutralizing intracellular acid loads at the basolateral membrane in cells of the medullary thick ascending limb (mTAL). Calcineurin inhibitors (Cn-Is) are known to both downregulate NBCn1 expression in the distal nephron and cause renal tubular acidosis (RTA), a risk factor for nephrocalcinosis and nephrolithiasis. In this report, we provide a new perspective on concurrent studies of NBCn1 in various tissues by using cell-free binding assays to investigate the interaction of NBCn1 with the calcineurin (Cn) isoform PPP3CA. Surface plasmon resonance (SPR) analyses show that the protein domain Exon 7 (translated from cassette II of NBCn1) binds Cn with an equilibrium dissociation constant (KD) of 30 +/- 15 nm. Linked-reaction tests suggest that the binding involves a conformational change. Nested PCR reactions were used to show that NBCn1-Exon 7 splice variants with alternative N-termini regions are expressed in the kidney, as well as other tissues. Additionally, we discuss NBCn1-Exon 7 implication in acid-base balance and calcium crystallization in the kidney.

Indexed as

Binding SitesCalcineurinCell-Free SystemExonsHumansKidneyProtein IsoformsProtein Structure, TertiarySodium-Bicarbonate SymportersSurface Plasmon ResonanceCalcineurinProtein IsoformsSLC4A7 protein, humanSodium-Bicarbonate Symportersbicarbonatecalcineurinrenal physiologysurface plasmon resonancetransporters

Identifiers

PMID25076853
PMCPMC4115197
OpenAlexW2155890118

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.