Evidence map›Paper›PMID 25076214›Full record

ArticlePloS one2014

Kinetic and sequence-structure-function analysis of LinB enzyme variants with β- and δ-hexachlorocyclohexane.

Rinku Pandey, Del Lucent, Kirti Kumari, Pooja Sharma, Rup Lal, John G Oakeshott, Gunjan Pandey

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Rinku PandeyCSIRO Ecosystem Sciences, Acton, ACT, Australia.
Del LucentCSIRO Center for Materials Science and Engineering, Parkville VIC, Australia; Division of Engineering and Physics, Wilkes University, Wilkes-Barre, Pennsylvania, United States of America.
Kirti KumariCSIRO Ecosystem Sciences, Acton, ACT, Australia; Department of Zoology, University of Delhi, Delhi, India.
Pooja SharmaCSIRO Ecosystem Sciences, Acton, ACT, Australia; Department of Zoology, University of Delhi, Delhi, India.
Rup LalDepartment of Zoology, University of Delhi, Delhi, India.
John G OakeshottCSIRO Ecosystem Sciences, Acton, ACT, Australia.
Gunjan PandeyCSIRO Ecosystem Sciences, Acton, ACT, Australia.
Ecosystem Sciences · AUCommonwealth Scientific and Industrial Research Organisation · AUMaterials Science & Engineering · AUUniversity of Delhi · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Organochlorine insecticide hexachlorocyclohexane (HCH) has recently been classified as a 'Persistent Organic pollutant' by the Stockholm Convention. The LinB haloalkane dehalogenase is a key upstream enzyme in the recently evolved Lin pathway for the catabolism of HCH in bacteria. Here we report a sequence-structure-function analysis of ten naturally occurring and thirteen synthetic mutants of LinB. One of the synthetic mutants was found to have ∼80 fold more activity for β- and δ-hexachlorocyclohexane. Based on detailed biophysical calculations, molecular dynamics and ensemble docking calculations, we propose that the latter variant is more active because of alterations to the shape of its active site and increased conformational plasticity.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionBacterial ProteinsCatalytic DomainHexachlorocyclohexaneHydrolasesInsecticidesKineticsMolecular Dynamics SimulationMolecular Sequence DataBacterial Proteinsbeta-hexachlorocyclohexanedelta-hexachlorocyclohexanehaloalkane dehalogenaseHexachlorocyclohexaneHydrolasesInsecticides

Identifiers

PMID25076214
PMCPMC4116220
OpenAlexW2062260564

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.