Evidence map›Paper›PMID 25076134›Full record

ArticlePloS one2014

Structural basis for the recognition in an idiotype-anti-idiotype antibody complex related to celiac disease.

Anna Vangone, Safwat Abdel-Azeim, Ivana Caputo, Daniele Sblattero, Roberto Di Niro, Luigi Cavallo, Romina Oliva

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  3. Article
  4. Article
  5. Review
  6. Article
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  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Anna VangoneDepartment of Chemistry and Biology, University of Salerno, Fisciano, Salerno, Italy.
Safwat Abdel-AzeimKaust Catalysis Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Ivana CaputoDepartment of Chemistry and Biology, University of Salerno, Fisciano, Salerno, Italy; European Laboratory for the Investigation of Food-Induced Diseases (ELFID), University Federico II, Naples, Italy.
Daniele SblatteroDepartment of Health Sciences and Interdisciplinary Research Center of Autoimmune Diseases (IRCAD), University of Eastern Piedmont, Novara, Italy.
Roberto Di NiroDepartment of Immunology, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Luigi CavalloKaust Catalysis Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia; Department of Chemistry and Biology, University of Salerno, Fisciano, Salerno, Italy.
Romina OlivaDepartment of Sciences and Technologies, University "Parthenope" of Naples, Naples, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anti-idiotype antibodies have potential therapeutic applications in many fields, including autoimmune diseases. Herein we report the isolation and characterization of AIM2, an anti-idiotype antibody elicited in a mouse model upon expression of the celiac disease-specific autoantibody MB2.8 (directed against the main disease autoantigen type 2 transglutaminase, TG2). To characterize the interaction between the two antibodies, a 3D model of the MB2.8-AIM2 complex has been obtained by molecular docking. Analysis and selection of the different obtained docking solutions was based on the conservation within them of the inter-residue contacts. The selected model is very well representative of the different solutions found and its stability is confirmed by molecular dynamics simulations. Furthermore, the binding mode it adopts is very similar to that observed in most of the experimental structures available for idiotype-anti-idiotype antibody complexes. In the obtained model, AIM2 is directed against the MB2.8 CDR region, especially on its variable light chain. This makes the concurrent formation of the MB2.8-AIM2 complex and of the MB2.8-TG2 complex incompatible, thus explaining the experimentally observed inhibitory effect on the MB2.8 binding to TG2.

Indexed as

Molecular Docking SimulationAmino Acid SequenceAnimalsAntibodies, Anti-IdiotypicAutoantibodiesBinding Sites, AntibodyCeliac DiseaseGTP-Binding ProteinsHumansMiceMolecular Dynamics SimulationMolecular Sequence DataProtein Glutamine gamma Glutamyltransferase 2TransglutaminasesAntibodies, Anti-IdiotypicAutoantibodiesGTP-Binding ProteinsProtein Glutamine gamma Glutamyltransferase 2Transglutaminases

Identifiers

PMID25076134
PMCPMC4116137

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.