Evidence map›Paper›PMID 25076049›Full record

ArticleJournal of the American Chemical Society2014

Systematic tuning of heme redox potentials and its effects on O2 reduction rates in a designed oxidase in myoglobin.

Ambika Bhagi-Damodaran, Igor D Petrik, Nicholas M Marshall, Howard Robinson, Yi Lu

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 93 citations in OpenAlex.

  1. Expression and Engineering of Conductive Cytochrome Nanowires.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Unveiling an Ultrareduced State of Heme in Myoglobin.Journal of the American Chemical Society · 2025
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Tailorable Tetrahelical Bundles as a Toolkit for Redox Studies.The journal of physical chemistry. B · 2022
    Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ambika Bhagi-DamodaranDepartment of Chemistry, University of Illinois, Urbana-Champaign , Urbana, Illinois 61801, United States.
Igor D Petrik
Nicholas M Marshall
Howard Robinson
Yi Lu
University of Illinois Urbana-Champaign · USBrookhaven National Laboratory · US

Funding

Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
DESIGNING HETERONUCLEAR METALLOENZYMESR01GM062211 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI LU, YI · 2001 to 2021
$5.1M
NIGMS NIH HHS GM062211NIGMS NIH HHS P41 GM111244NIGMS NIH HHS R01 GM062211
6 · The paper itself

Abstract

Cytochrome c Oxidase (CcO) is known to catalyze the reduction of O2 to H2O efficiently with a much lower overpotential than most other O2 reduction catalysts. However, methods by which the enzyme fine-tunes the reduction potential (E°) of its active site and the corresponding influence on the O2 reduction activity are not well understood. In this work, we report systematic tuning of the heme E° in a functional model of CcO in myoglobin containing three histidines and one tyrosine in the distal pocket of heme. By removing hydrogen-bonding interactions between Ser92 and the proximal His ligand and a heme propionate, and increasing hydrophobicity of the heme pocket through Ser92Ala mutation, we have increased the heme E° from 95 ± 2 to 123 ± 3 mV. Additionally, replacing the native heme b in the CcO mimic with heme a analogs, diacetyl, monoformyl, and diformyl hemes, that posses electron-withdrawing groups, resulted in higher E° values of 175 ± 5, 210 ± 6, and 320 ± 10 mV, respectively. Furthermore, O2 consumption studies on these CcO mimics revealed a strong enhancement in O2 reduction rates with increasing heme E°. Such methods of tuning the heme E° through a combination of secondary sphere mutations and heme substitutions can be applied to tune E° of other heme proteins, allowing for comprehensive investigations of the relationship between E° and enzymatic activity.

Indexed as

AlanineAnimalsBinding SitesBiocatalysisCopperElectron Transport Complex IVHemeHistidineHydrogen BondingMaleModels, MolecularMyoglobinOxidation-ReductionOxygenProtein EngineeringSerineAlanineCopperElectron Transport Complex IVHemeHistidineMyoglobinOxygenSerine

Identifiers

PMID25076049
PMCPMC4151708
OpenAlexW2312455466

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.