Evidence map›Paper›PMID 25075329›Full record

ArticleIUCrJ2014

Structural insight into activity enhancement and inhibition of H64A carbonic anhydrase II by imidazoles.

Mayank Aggarwal, Bhargav Kondeti, Chingkuang Tu, C Mark Maupin, David N Silverman, Robert McKenna

Open access · goldAbstract read
In one paragraph

Article in IUCrJ, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Carbonic anhydrase modification for carbon management.Environmental science and pollution research international · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Polyamines and α-Carbonic Anhydrases.Molecules (Basel, Switzerland) · 2016
    Review
  13. Article
  14. Article
  15. Non-Classical Inhibition of Carbonic Anhydrase.International journal of molecular sciences · 2016
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Mayank AggarwalDepartment of Biochemistry and Molecular Biology, University of Florida , PO Box 100245, Gainesville, FL 32610, USA.
Bhargav KondetiDepartment of Biochemistry and Molecular Biology, University of Florida , PO Box 100245, Gainesville, FL 32610, USA.
Chingkuang TuDepartment of Pharmacology and Therapeutics, University of Florida , PO Box 100247, Gainesville, FL 32610, USA.
C Mark MaupinDepartment of Chemical and Biological Engineering, Colorado School of Mines , 1500 Illinois Street, Golden, CO 80401, USA.
David N SilvermanDepartment of Pharmacology and Therapeutics, University of Florida , PO Box 100247, Gainesville, FL 32610, USA.
Robert McKennaDepartment of Biochemistry and Molecular Biology, University of Florida , PO Box 100245, Gainesville, FL 32610, USA.
University of Florida · USColorado School of Mines · US

Funding

CATALYTIC MECHANISM OF CARBONIC ANHYDRASER01GM025154 · NIGMS · UNIVERSITY OF FLORIDA · PI SILVERMAN, DAVID N · 1985 to 2012
$4.5M
NIGMS NIH HHS R01 GM025154
6 · The paper itself

Abstract

Human carbonic anhydrases (CAs) are zinc metalloenzymes that catalyze the hydration and dehydration of CO2 and HCO3 (-), respectively. The reaction follows a ping-pong mechanism, in which the rate-limiting step is the transfer of a proton from the zinc-bound solvent (OH(-)/H2O) in/out of the active site via His64, which is widely believed to be the proton-shuttling residue. The decreased catalytic activity (∼20-fold lower with respect to the wild type) of a variant of CA II in which His64 is replaced with Ala (H64A CA II) can be enhanced by exogenous proton donors/acceptors, usually derivatives of imidazoles and pyridines, to almost the wild-type level. X-ray crystal structures of H64A CA II in complex with four imidazole derivatives (imidazole, 1--methylimidazole, 2--methylimidazole and 4-methylimidazole) have been determined and reveal multiple binding sites. Two of these imidazole binding sites have been identified that mimic the positions of the 'in' and 'out' rotamers of His64 in wild-type CA II, while another directly inhibits catalysis by displacing the zinc-bound solvent. The data presented here not only corroborate the importance of the imidazole side chain of His64 in proton transfer during CA catalysis, but also provide a complete structural understanding of the mechanism by which imidazoles enhance (and inhibit when used at higher concentrations) the activity of H64A CA II.

Indexed as

activationactivity enhancementH64Ahuman carbonic anhydraseimidazolerescue

Identifiers

PMID25075329
PMCPMC4062085
OpenAlexW2139517918

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.