Evidence map›Paper›PMID 25073741›Full record

ArticleMolecular & cellular proteomics : MCP2014

Suberoylanilide hydroxamic acid (SAHA)-induced dynamics of a human histone deacetylase protein interaction network.

Mihaela E Sardiu, Karen T Smith, Brad D Groppe, Joshua M Gilmore, Anita Saraf, Rhonda Egidy, Allison Peak, Chris W Seidel, Laurence Florens, Jerry L Workman and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  7. Polycomb Repressive Complex 2 in Oncology.Cancer treatment and research · 2023
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  19. Article
  20. There is no human interactome.Genome biology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Mihaela E SardiuFrom the ‡Stowers Institute for Medical Research, Kansas City, Missouri 64110;
Karen T SmithFrom the ‡Stowers Institute for Medical Research, Kansas City, Missouri 64110;
Brad D GroppeFrom the ‡Stowers Institute for Medical Research, Kansas City, Missouri 64110;
Joshua M GilmoreFrom the ‡Stowers Institute for Medical Research, Kansas City, Missouri 64110;
Anita SarafFrom the ‡Stowers Institute for Medical Research, Kansas City, Missouri 64110;
Rhonda EgidyFrom the ‡Stowers Institute for Medical Research, Kansas City, Missouri 64110;
Allison PeakFrom the ‡Stowers Institute for Medical Research, Kansas City, Missouri 64110;
Chris W SeidelFrom the ‡Stowers Institute for Medical Research, Kansas City, Missouri 64110;
Laurence FlorensFrom the ‡Stowers Institute for Medical Research, Kansas City, Missouri 64110;
Jerry L WorkmanFrom the ‡Stowers Institute for Medical Research, Kansas City, Missouri 64110;
Michael P WashburnFrom the ‡Stowers Institute for Medical Research, Kansas City, Missouri 64110; ¶Department of Pathology and Laboratory Medicine, the University of Kansas Medical Center, 3901 Rainbow Blvd., Kansas City, Kansas 66160 mpw@stowers.org.
Stowers Institute for Medical Research · US

Funding

Mechanisms of Transcriptional Regulation in ChromatinR37GM047867 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI WORKMAN, JERRY L · 2001 to 2010
$3.4M
Novel HDAC-interacting proteins that regulate breast cancer cell growthF32CA130468 · NCI · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI SMITH, KAREN · 2007 to 2008
$65k
NCI NIH HHS 5F32CA130468NCI NIH HHS F32 CA130468NIGMS NIH HHS R37 GM047867
6 · The paper itself

Abstract

Histone deacetylases (HDACs) are targets for cancer therapy. Suberoylanilide hydroxamic acid (SAHA) is an HDAC inhibitor approved by the U.S. Food and Drug Administration for the treatment of cutaneous T-cell lymphoma. To obtain a better mechanistic understanding of the Sin3/HDAC complex in cancer, we extended its protein-protein interaction network and identified a mutually exclusive pair within the complex. We then assessed the effects of SAHA on the disruption of the complex network through six homologous baits. SAHA perturbs multiple protein interactions and therefore compromises the composition of large parts of the Sin3/HDAC network. A comparison of the effect of SAHA treatment on gene expression in breast cancer cells to a knockdown of the ING2 subunit indicated that a portion of the anticancer effects of SAHA may be attributed to the disruption of ING2's association with the complex. Our dynamic protein interaction network resource provides novel insights into the molecular mechanism of SAHA action and demonstrates the potential for drugs to rewire networks.

Indexed as

Protein Interaction MapsCell Line, TumorFemaleGene ExpressionGene Expression RegulationHistone Deacetylase InhibitorsHistone DeacetylasesHomeodomain ProteinsHumansHydroxamic AcidsProtein BindingReceptors, Cytoplasmic and NuclearSin3 Histone Deacetylase and Corepressor ComplexTriple Negative Breast NeoplasmsTumor Suppressor ProteinsVorinostatHistone Deacetylase InhibitorsHistone DeacetylasesHomeodomain ProteinsHydroxamic AcidsING2 protein, humanReceptors, Cytoplasmic and NuclearSin3 Histone Deacetylase and Corepressor ComplexTumor Suppressor ProteinsVorinostat

Identifiers

PMID25073741
PMCPMC4223495
OpenAlexW2147096811

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.