Evidence map›Paper›PMID 25072641›Full record

ArticlePloS one2014

Gene expression analysis suggests bone development-related genes GDF5 and DIO2 are involved in the development of Kashin-Beck disease in children rather than adults.

Yan Wen, Feng Zhang, Chunyan Li, Shulan He, Wuhong Tan, Yanxia Lei, Qiang Zhang, Hanjie Yu, Jingjing Zheng, Xiong Guo

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
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  5. Article
  6. A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2017
    Article
  7. Gene expression signature in endemic osteoarthritis by microarray analysis.International journal of molecular sciences · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Yan WenSchool of Public Health, Health Science Center, Key Laboratory of Environment and Gene Related Diseases of Ministry Education, Key Laboratory of Trace Elements and Endemic Diseases of Ministry Health, Xi'an Jiaotong University, Xi'an, Shaanxi, P. R. China.
Feng ZhangSchool of Public Health, Health Science Center, Key Laboratory of Environment and Gene Related Diseases of Ministry Education, Key Laboratory of Trace Elements and Endemic Diseases of Ministry Health, Xi'an Jiaotong University, Xi'an, Shaanxi, P. R. China.
Chunyan LiSchool of Public Health, Health Science Center, Key Laboratory of Environment and Gene Related Diseases of Ministry Education, Key Laboratory of Trace Elements and Endemic Diseases of Ministry Health, Xi'an Jiaotong University, Xi'an, Shaanxi, P. R. China.
Shulan HeSchool of Public Health, Health Science Center, Key Laboratory of Environment and Gene Related Diseases of Ministry Education, Key Laboratory of Trace Elements and Endemic Diseases of Ministry Health, Xi'an Jiaotong University, Xi'an, Shaanxi, P. R. China.
Wuhong TanSchool of Public Health, Health Science Center, Key Laboratory of Environment and Gene Related Diseases of Ministry Education, Key Laboratory of Trace Elements and Endemic Diseases of Ministry Health, Xi'an Jiaotong University, Xi'an, Shaanxi, P. R. China.
Yanxia LeiSchool of Public Health, Health Science Center, Key Laboratory of Environment and Gene Related Diseases of Ministry Education, Key Laboratory of Trace Elements and Endemic Diseases of Ministry Health, Xi'an Jiaotong University, Xi'an, Shaanxi, P. R. China.
Qiang ZhangDepartment of Kashin-Beck Diseases, Qinghai Institute for Endemic Disease Control and Prevention, Xining, Qinghai, P. R. China.
Hanjie YuNational Engineering Research Center for Miniaturized Detection Systems, Northwest University, Xi'an, Shaanxi, P. R. China.
Jingjing ZhengSchool of Public Health, Health Science Center, Key Laboratory of Environment and Gene Related Diseases of Ministry Education, Key Laboratory of Trace Elements and Endemic Diseases of Ministry Health, Xi'an Jiaotong University, Xi'an, Shaanxi, P. R. China.
Xiong GuoSchool of Public Health, Health Science Center, Key Laboratory of Environment and Gene Related Diseases of Ministry Education, Key Laboratory of Trace Elements and Endemic Diseases of Ministry Health, Xi'an Jiaotong University, Xi'an, Shaanxi, P. R. China.
Xi'an Jiaotong University · CNNorthwest University · CNQinghai Institute for Endemic Diease Prevention and Control · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveTo investigate the differences in gene expression between children and adults with Kashin-Beck disease (KBD).

methods12 children with KBD and 12 healthy children were selected and divided into 4 KBD vs. control pairs matched according to age and gender, with each pair having 3 KBD children and 3 healthy children. Additionally, 15 adults with KBD and 15 healthy adults were selected and divided into 5 KBD vs. control pairs matched according to age and gender, with each pair having 3 KBD adults and 3 healthy adults. Total RNA was isolated from peripheral blood mononuclear cells (PBMCs) respectively. A total of 367 target genes were selected based on previous genome-wide gene expression profile analysis. Expression levels of the 367 genes were evaluated by customized oligonucleotide microarray and the differentially expressed genes were identified. Quantitative real-time reverse transcription polymerase chain reaction (qRT-PCR) was conducted to validate the microarray data.

resultsA total of 95 (25.9%) genes in KBD children and 158 (43.1%) genes in KBD adults were found to exhibit more than two-fold change in gene expression level relative to healthy controls. By comparing differentially expressed genes identified in KBD children to those of KBD adults, 42 genes were found to be differentially expressed only in KBD children. And 105 genes were found to be differentially expressed only in KBD adults. Further, 16 differentially expressed genes common to both KBD children and adults were found to be asynchronously expressed in KBD children compared to KBD adults.

conclusionSignificant differences in gene expression pattern were identified between KBD children and KBD adults, indicating different molecular mechanisms underlying cartilage lesions of KBD children and KBD adults. In addition, bone development-related genes GDF5 (expression ratio = 2.14±0.02) and DIO2 (expression ratio = 0.11±0.05) may contribute to the development of KBD in children rather than in adults.

Indexed as

AdolescentAdultAgedBone and BonesChildFemaleGrowth Differentiation Factor 5HumansIodide PeroxidaseIodothyronine Deiodinase Type IIKashin-Beck DiseaseMaleMiddle AgedNucleic Acid HybridizationOligonucleotide Array Sequence AnalysisRadiographyGDF5 protein, humanGrowth Differentiation Factor 5Iodide PeroxidaseIodothyronine Deiodinase Type II

Identifiers

PMID25072641
PMCPMC4114804
OpenAlexW2155112671

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.