Evidence map›Paper›PMID 25071997›Full record

ArticlePeerJ2014

Local domestication of lactic acid bacteria via cassava beer fermentation.

Alese M Colehour, James F Meadow, Melissa A Liebert, Tara J Cepon-Robins, Theresa E Gildner, Samuel S Urlacher, Brendan J M Bohannan, J Josh Snodgrass, Lawrence S Sugiyama

Abstract read
In one paragraph

Article in PeerJ, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Probiotics and Fermented Foods in Human Nutrition.Molecules (Basel, Switzerland) · 2026
    Review
  2. The Shuar Health and Life History Project: Overview at 20 Years and Introduction to the Special Issue.American journal of human biology : the official journal of the Human Biology Council · 2026
    Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Symbiosis and the Anthropocene.Symbiosis (Philadelphia, Pa.) · 2021
    Article
  8. Article
  9. Observational
  10. Article
  11. Article
  12. Article
  13. Article
  14. Physical growth of the shuar: Height, Weight, and BMI references for an indigenous amazonian population.American journal of human biology : the official journal of the Human Biology Council
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alese M ColehourDepartment of Anthropology, University of Oregon , Eugene, OR , USA ; Institute of Ecology and Evolution, University of Oregon , Eugene, OR , USA.
James F MeadowInstitute of Ecology and Evolution, University of Oregon , Eugene, OR , USA.
Melissa A LiebertDepartment of Anthropology, University of Oregon , Eugene, OR , USA.
Tara J Cepon-RobinsDepartment of Anthropology, University of Oregon , Eugene, OR , USA.
Theresa E GildnerDepartment of Anthropology, University of Oregon , Eugene, OR , USA.
Samuel S UrlacherDepartment of Human Evolutionary Biology, Harvard University , Cambridge, MA , USA.
Brendan J M BohannanInstitute of Ecology and Evolution, University of Oregon , Eugene, OR , USA.
J Josh SnodgrassDepartment of Anthropology, University of Oregon , Eugene, OR , USA.
Lawrence S SugiyamaDepartment of Anthropology, University of Oregon , Eugene, OR , USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cassava beer, or chicha, is typically consumed daily by the indigenous Shuar people of the Ecuadorian Amazon. This traditional beverage made from cassava tuber (Manihot esculenta) is thought to improve nutritional quality and flavor while extending shelf life in a tropical climate. Bacteria responsible for chicha fermentation could be a source of microbes for the human microbiome, but little is known regarding the microbiology of chicha. We investigated bacterial community composition of chicha batches using Illumina high-throughput sequencing. Fermented chicha samples were collected from seven Shuar households in two neighboring villages in the Morona-Santiago region of Ecuador, and the composition of the bacterial communities within each chicha sample was determined by sequencing a region of the 16S ribosomal gene. Members of the genus Lactobacillus dominated all samples. Significantly greater phylogenetic similarity was observed among chicha samples taken within a village than those from different villages. Community composition varied among chicha samples, even those separated by short geographic distances, suggesting that ecological and/or evolutionary processes, including human-mediated factors, may be responsible for creating locally distinct ferments. Our results add to evidence from other fermentation systems suggesting that traditional fermentation may be a form of domestication, providing endemic beneficial inocula for consumers, but additional research is needed to identify the mechanisms and extent of microbial dispersal.

Indexed as

16S ribosomalAlcoholic beverageArtisanal starter cultureFermentationFood microbiologyHigh-throughput sequencingLactic acid bacteriaLactobacillusManiotMicrobial domestication

Identifiers

PMID25071997
PMCPMC4103073

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.