ReviewFrontiers in genetics2014
Genetic anchoring of whole-genome shotgun assemblies.
Review in Frontiers in genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
31 citing papers in PubMed.
- Multidirectional Chromosomal Painting in the Harpy Eagle (Animals : an open access journal from MDPI · 2026Article
- Unlocking plant genetics with telomere-to-telomere genome assemblies.Nature genetics · 2024Review
- Resequencing and characterization of the firstPeerJ · 2024Article
- Smooth Descent: A ploidy-aware algorithm to improve linkage mapping in the presence of genotyping errors.Frontiers in genetics · 2023Article
- A technical guide to TRITEX, a computational pipeline for chromosome-scale sequence assembly of plant genomes.Plant methods · 2022Article
- Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement.Journal of advanced research · 2022Article
- Interpopulation variation of transposable elements of the hAT superfamily in Drosophila willistoni (Diptera: Drosophilidae): in-situ approach.Genetics and molecular biology · 2022Article
- Chromosome anchoring in Senegalese sole (Solea senegalensis) reveals sex-associated markers and genome rearrangements in flatfish.Scientific reports · 2021Article
- Genome sequence of Hydrangea macrophylla and its application in analysis of the double flower phenotype.DNA research : an international journal for rapid publication of reports on genes and genomes · 2021Article
- Fundoscopy-directed genetic testing to re-evaluate negative whole exome sequencing results.Orphanet journal of rare diseases · 2020Article
- A pentaploid-based linkage map of the ancestral octoploid strawberryHorticulture research · 2020Article
- Genomic approaches for studying crop evolution.Genome biology · 2018Review
- The High-Quality Genome Sequence of the Oceanic Island Endemic Species Drosophila guanche Reveals Signals of Adaptive Evolution in Genes Related to Flight and Genome Stability.Genome biology and evolution · 2018Article
- Molecular cytogenetic and morphological characterization of two wheat-barley translocation lines.PloS one · 2018Article
- Recent progress in whole genome sequencing, high-density linkage maps, and genomic databases of ornamental plants.Breeding science · 2018Review
- The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies.BMC genomics · 2017Article
- Article
- Building Ultra-High-Density Linkage Maps Based on Efficient Filtering of Trustable Markers.Genetics · 2017Article
- The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity.BMC genomics · 2017Article
- De novo hybrid assembly of the rubber tree genome reveals evidence of paleotetraploidy in Hevea species.Scientific reports · 2017Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The recent advances in sequencing throughput and genome assembly algorithms have established whole-genome shotgun (WGS) assemblies as the cornerstone of the genomic infrastructure for many species. WGS assemblies can be constructed with comparative ease and give a comprehensive representation of the gene space even of large and complex genomes. One major obstacle in utilizing WGS assemblies for important research applications such as gene isolation or comparative genomics has been the lack of chromosomal positioning and contextualization of short sequence contigs. Assigning chromosomal locations to sequence contigs required the construction and integration of genome-wide physical maps and dense genetic linkage maps as well as synteny to model species. Recently, methods to rapidly construct ultra-dense linkage maps encompassing millions of genetic markers from WGS sequencing data of segregating populations have made possible the direct assignment of genetic positions to short sequence contigs. Here, we review recent developments in the integration of WGS assemblies and sequence-based linkage maps, discuss challenges for further improvement of the methodology and outline possible applications building on genetically anchored WGS assemblies.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.