Evidence map›Paper›PMID 25071213›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Threonine-4 of the budding yeast RNAP II CTD couples transcription with Htz1-mediated chromatin remodeling.

Emanuel Rosonina, Nathan Yurko, Wencheng Li, Mainul Hoque, Bin Tian, James L Manley

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. ThrScience advances · 2024
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. The INO80 remodeller in transcription, replication and repair.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  16. Article
  17. Article
  18. Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  19. Roles of Sumoylation in mRNA Processing and Metabolism.Advances in experimental medicine and biology · 2017
    Review
  20. The pol II CTD: new twists in the tail.Nature structural & molecular biology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Emanuel RosoninaDepartment of Biological Sciences, Columbia University, New York, NY 10027; and.
Nathan YurkoDepartment of Biological Sciences, Columbia University, New York, NY 10027; and.
Wencheng LiDepartment of Biochemistry and Molecular Biology, Rutgers New Jersey Medical School, Newark, NJ 07101.
Mainul HoqueDepartment of Biochemistry and Molecular Biology, Rutgers New Jersey Medical School, Newark, NJ 07101.
Bin TianDepartment of Biochemistry and Molecular Biology, Rutgers New Jersey Medical School, Newark, NJ 07101.
James L ManleyDepartment of Biological Sciences, Columbia University, New York, NY 10027; and jlm2@columbia.edu.
Columbia University · USRutgers New Jersey Medical SchoolRutgers, The State University of New Jersey · US

Funding

Regulation of Alternative Cleavage and PolyadenylationR01GM084089 · NIGMS · WISTAR INSTITUTE · PI TIAN, BIN · 2008 to 2023
$6.7M
CELLULAR AND MOLECULAR FOUNDATIONS OF BIOMEDICAL SCIENCET32GM008798 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRYWES, RON M · 2001 to 2018
$6.3M
Transcriptional regulation by protein sumoylationR01GM097174 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MANLEY, JAMES L. · 2011 to 2014
$990k
NIGMS NIH HHS R01 GM084089NIGMS NIH HHS R01GM084089NIGMS NIH HHS R01 GM097174NIGMS NIH HHS R01GM097174NIGMS NIH HHS T32 GM008798
6 · The paper itself

Abstract

The C-terminal domain (CTD) of the largest subunit of RNA polymerase II (RNAP II) consists of repeated YSPTSPS heptapeptides and connects transcription with cotranscriptional events. Threonine-4 (Thr4) of the CTD repeats has been shown to function in histone mRNA 3'-end processing in chicken cells and in transcriptional elongation in human cells. Here, we demonstrate that, in budding yeast, Thr4, although dispensable for growth in rich media, is essential in phosphate-depleted or galactose-containing media. Thr4 is required to maintain repression of phosphate-regulated (PHO) genes under normal growth conditions and for full induction of PHO5 and the galactose-induced GAL1 and GAL7 genes. We identify genetic links between Thr4 and the histone variant Htz1 and show that Thr4, as well as the Ino80 chromatin remodeler, is required for activation-associated eviction of Htz1 specifically from promoters of the Thr4-dependent genes. Our study uncovers a connection between transcription and chromatin remodeling linked by Thr4 of the CTD.

Indexed as

Transcription, GeneticChromatin Assembly and DisassemblyCulture MediaGenes, FungalHistonesPhosphorylationRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsThreonineCulture MediaHistonesHtz1 protein, S cerevisiaeRNA Polymerase IISaccharomyces cerevisiae ProteinsThreonineH2A.ZSWRc

Identifiers

PMID25071213
PMCPMC4143052
OpenAlexW2030436706

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.