Evidence map›Paper›PMID 25070642›Full record

ArticleThe Plant cell2014

Transcriptome analysis reveals the same 17 S-locus F-box genes in two haplotypes of the self-incompatibility locus of Petunia inflata.

Justin S Williams, Joshua P Der, Claude W dePamphilis, Teh-Hui Kao

Abstract read
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Justin S WilliamsDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802.ORCID http://orcid.org/0000-0002-0195-5509
Joshua P DerDepartment of Biology, Pennsylvania State University, University Park, Pennsylvania 16802.ORCID http://orcid.org/0000-0001-9668-2525
Claude W dePamphilisDepartment of Biology, Pennsylvania State University, University Park, Pennsylvania 16802 Intercollege Graduate Degree Program in Plant Biology, Pennsylvania State University, University Park, Pennsylvania 16802.
Teh-Hui KaoDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802 Intercollege Graduate Degree Program in Plant Biology, Pennsylvania State University, University Park, Pennsylvania 16802 txk3@psu.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Petunia possesses self-incompatibility, by which pistils reject self-pollen but accept non-self-pollen for fertilization. Self-/non-self-recognition between pollen and pistil is regulated by the pistil-specific S-RNase gene and by multiple pollen-specific S-locus F-box (SLF) genes. To date, 10 SLF genes have been identified by various methods, and seven have been shown to be involved in pollen specificity. For a given S-haplotype, each SLF interacts with a subset of its non-self S-RNases, and an as yet unknown number of SLFs are thought to collectively mediate ubiquitination and degradation of all non-self S-RNases to allow cross-compatible pollination. To identify a complete suite of SLF genes of P. inflata, we used a de novo RNA-seq approach to analyze the pollen transcriptomes of S2-haplotype and S3-haplotype, as well as the leaf transcriptome of the S3S3 genotype. We searched for genes that fit several criteria established from the properties of the known SLF genes and identified the same seven new SLF genes in S2-haplotype and S3-haplotype, suggesting that a total of 17 SLF genes constitute pollen specificity in each S-haplotype. This finding lays the foundation for understanding how multiple SLF genes evolved and the biochemical basis for differential interactions between SLF proteins and S-RNases.

Indexed as

Gene Expression Regulation, PlantTranscriptomeAllelesDNA PrimersF-Box ProteinsFlowersGene Expression ProfilingGenetic LinkageGenetic LociHaplotypesPetuniaPlant ProteinsPlants, Genetically ModifiedPollenPollinationProteolysisDNA PrimersF-Box ProteinsPlant ProteinsRibonucleases

Identifiers

PMID25070642
PMCPMC4145120

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.