Evidence map›Paper›PMID 25070638›Full record

ArticleThe Plant cell2014

Arabidopsis and maize RidA proteins preempt reactive enamine/imine damage to branched-chain amino acid biosynthesis in plastids.

Thomas D Niehaus, Thuy N D Nguyen, Satinder K Gidda, Mona ElBadawi-Sidhu, Jennifer A Lambrecht, Donald R McCarty, Diana M Downs, Arthur J L Cooper, Oliver Fiehn, Robert T Mullen and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
  2. Article
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  5. Review
  6. DadY (PA5303) is required for fitness ofMicrobial cell (Graz, Austria) · 2022
    Article
  7. Review
  8. Article
  9. Article
  10. RidA Proteins Protect against Metabolic Damage by Reactive Intermediates.Microbiology and molecular biology reviews : MMBR · 2020
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Thomas D NiehausHorticultural Sciences Department, University of Florida, Gainesville, Florida 32611 tomniehaus@ufl.edu.
Thuy N D NguyenDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
Satinder K GiddaDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
Mona ElBadawi-SidhuMetabolics Core, UC Davis Genome Center, University of California, Davis, California 95616.
Jennifer A LambrechtDepartment of Microbiology, University of Georgia, Athens, Georgia 30602.
Donald R McCartyHorticultural Sciences Department, University of Florida, Gainesville, Florida 32611.
Diana M DownsDepartment of Microbiology, University of Georgia, Athens, Georgia 30602.
Arthur J L CooperDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, New York 10595.
Oliver FiehnMetabolics Core, UC Davis Genome Center, University of California, Davis, California 95616.
Robert T MullenDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
Andrew D HansonHorticultural Sciences Department, University of Florida, Gainesville, Florida 32611.
University of Florida · USUniversity of Guelph · CAUniversity of California, Davis · USUniversity of Georgia · USNew York Medical College · US

Funding

GRADUATE TRAINING IN MOLECULAR BIOSCIENCEST32GM007215 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HULL, CHRISTINA M · 1985 to 2018
$22.5M
Rid family members neutralize endogenous metabolic stressorsR01GM095837 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DOWNS, DIANA M. · 2011 to 2023
$3.7M
NIGMS NIH HHS R01 GM095837NIGMS NIH HHS T32 GM007215
6 · The paper itself

Abstract

RidA (for Reactive Intermediate Deaminase A) proteins are ubiquitous, yet their function in eukaryotes is unclear. It is known that deleting Salmonella enterica ridA causes Ser sensitivity and that S. enterica RidA and its homologs from other organisms hydrolyze the enamine/imine intermediates that Thr dehydratase forms from Ser or Thr. In S. enterica, the Ser-derived enamine/imine inactivates a branched-chain aminotransferase; RidA prevents this damage. Arabidopsis thaliana and maize (Zea mays) have a RidA homolog that is predicted to be plastidial. Expression of either homolog complemented the Ser sensitivity of the S. enterica ridA mutant. The purified proteins hydrolyzed the enamines/imines formed by Thr dehydratase from Ser or Thr and protected the Arabidopsis plastidial branched-chain aminotransferase BCAT3 from inactivation by the Ser-derived enamine/imine. In vitro chloroplast import assays and in vivo localization of green fluorescent protein fusions showed that Arabidopsis RidA and Thr dehydratase are chloroplast targeted. Disrupting Arabidopsis RidA reduced root growth and raised the root and shoot levels of the branched-chain amino acid biosynthesis intermediate 2-oxobutanoate; Ser treatment exacerbated these effects in roots. Supplying Ile reversed the root growth defect. These results indicate that plastidial RidA proteins can preempt damage to BCAT3 and Ile biosynthesis by hydrolyzing the Ser-derived enamine/imine product of Thr dehydratase.

Indexed as

Amino Acids, Branched-ChainAmino Acid SequenceAminohydrolasesAnimalsArabidopsisArabidopsis ProteinsButyratesHydrolysisIminesL-Serine DehydrataseMetabolomicsMolecular Sequence DataPlant ProteinsPlant RootsPlant ShootsPlastidsalpha-ketobutyric acidAmino Acids, Branched-ChainAminohydrolasesArabidopsis Proteinsbranched-chain aminotransferase-3, ArabidopsisButyratesIminesL-Serine DehydratasePlant ProteinsRidA protein, ArabidopsisThreonine DehydrataseTransaminases

Identifiers

PMID25070638
PMCPMC4145128
OpenAlexW2157728190

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.