Evidence map›Paper›PMID 25070421›Full record

ArticleBioorganic & medicinal chemistry letters2014

Evaluation of class I HDAC isoform selectivity of largazole analogues.

Bumki Kim, Heekwang Park, Lilibeth A Salvador, Patrick E Serrano, Jason C Kwan, Sabrina L Zeller, Qi-Yin Chen, Soyoung Ryu, Yanxia Liu, Seongrim Byeon and 2 more

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
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  7. Gatorbulin-1, a distinct cyclodepsipeptide chemotype, targets a seventh tubulin pharmacological site.Proceedings of the National Academy of Sciences of the United States of America · 2021
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  17. An overview of naturally occurring histone deacetylase inhibitors.Current topics in medicinal chemistry · 2015
    Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Bumki KimDepartment of Chemistry, Duke University, Durham, NC 27708, United States.
Heekwang ParkDepartment of Chemistry, Duke University, Durham, NC 27708, United States.
Lilibeth A SalvadorDepartment of Medicinal Chemistry, College of Pharmacy, University of Florida, Gainesville, FL 32610, United States; Marine Science Institute, College of Science, University of the Philippines, Diliman, Quezon City 1100, Philippines.
Patrick E SerranoDepartment of Chemistry, Duke University, Durham, NC 27708, United States.
Jason C KwanDepartment of Medicinal Chemistry, College of Pharmacy, University of Florida, Gainesville, FL 32610, United States.
Sabrina L ZellerDepartment of Chemistry, Duke University, Durham, NC 27708, United States.
Qi-Yin ChenDepartment of Medicinal Chemistry, College of Pharmacy, University of Florida, Gainesville, FL 32610, United States; Center for Natural Products, Drug Discovery and Development (CNPD3), University of Florida, Gainesville, FL 32610, United States.
Soyoung RyuDepartment of Chemistry, Duke University, Durham, NC 27708, United States.
Yanxia LiuDepartment of Medicinal Chemistry, College of Pharmacy, University of Florida, Gainesville, FL 32610, United States; Center for Natural Products, Drug Discovery and Development (CNPD3), University of Florida, Gainesville, FL 32610, United States.
Seongrim ByeonDepartment of Chemistry, Duke University, Durham, NC 27708, United States.
Hendrik LueschDepartment of Medicinal Chemistry, College of Pharmacy, University of Florida, Gainesville, FL 32610, United States; Center for Natural Products, Drug Discovery and Development (CNPD3), University of Florida, Gainesville, FL 32610, United States. Electronic address: luesch@cop.ufl.edu.
Jiyong HongDepartment of Chemistry, Duke University, Durham, NC 27708, United States; Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC 27710, United States. Electronic address: jiyong.hong@duke.edu.
Duke University · USUniversity of Florida · USDuke University Hospital · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI DONNA NIEDZWIECKI · 1985 to 2026
$174.8M
Chemistry and Biology of LargazolesR01CA138544 · NCI · UNIVERSITY OF FLORIDA · PI HONG, JIYONG, LUESCH, HENDRIK · 2009 to 2012
$1.2M
NCI NIH HHS P30 CA014236NCI NIH HHS R01 CA138544NCI NIH HHS R01CA138544
6 · The paper itself

Abstract

Largazole is a potent class I selective histone deacetylase (HDAC) inhibitor. The majority of largazole analogues to date have modified the thiazole-thiazoline and the warhead moiety. In order to elucidate class I-specific structure-activity relationships, a series of analogues with modifications in the valine or the linker region were prepared and evaluated for their class I isoform selectivity. The inhibition profile showed that the C2 position of largazole has an optimal steric requirement for efficient HDAC inhibition and that substitution of the trans-alkene in the linker with an aromatic group results in complete loss of activity. This data will aid the design of class I isoform selective HDAC inhibitors.

Indexed as

DepsipeptidesDose-Response Relationship, DrugHistone Deacetylase 1Histone Deacetylase InhibitorsHumansIsoenzymesMolecular StructureStructure-Activity RelationshipThiazolesDepsipeptidesHDAC1 protein, humanHistone Deacetylase 1Histone Deacetylase InhibitorsIsoenzymeslargazoleThiazolesClass I histone deacetylaseHDAC inhibitorIsoform selectivityLargazoleStructure–activity relationship

Identifiers

PMID25070421
PMCPMC4135083
OpenAlexW2005795188

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.