Evidence map›Paper›PMID 25069018›Full record

ArticleScientific reports2014

Protein engineering of selected residues from conserved sequence regions of a novel Anoxybacillus α-amylase.

Velayudhan Ranjani, Stefan Janeček, Kian Piaw Chai, Shafinaz Shahir, Raja Noor Zaliha Raja Abdul Rahman, Kok-Gan Chan, Kian Mau Goh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Velayudhan RanjaniFaculty of Biosciences and Medical Engineering, Universiti Teknologi Malaysia, Skudai, 81310 Johor, Malaysia.
Stefan Janeček1] Laboratory of Protein Evolution, Institute of Molecular Biology, Slovak Academy of Sciences, SK-84551 Bratislava, Slovakia [2] Department of Biology, Faculty of Natural Sciences, University of SS. Cyril and Methodius, SK-91701 Trnava, Slovakia.
Kian Piaw ChaiFaculty of Biosciences and Medical Engineering, Universiti Teknologi Malaysia, Skudai, 81310 Johor, Malaysia.
Shafinaz ShahirFaculty of Biosciences and Medical Engineering, Universiti Teknologi Malaysia, Skudai, 81310 Johor, Malaysia.
Raja Noor Zaliha Raja Abdul RahmanEnzyme and Microbial Technology Research Centre, Faculty of Biotechnology and Biomolecular Science, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
Kok-Gan ChanDivision of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603 Kuala Lumpur, Malaysia.
Kian Mau GohFaculty of Biosciences and Medical Engineering, Universiti Teknologi Malaysia, Skudai, 81310 Johor, Malaysia.
University of Technology Malaysia · MYSlovak Academy of Sciences · SKUniversiti Putra Malaysia · MYUniversity of Malaya · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The α-amylases from Anoxybacillus species (ASKA and ADTA), Bacillus aquimaris (BaqA) and Geobacillus thermoleovorans (GTA, Pizzo and GtamyII) were proposed as a novel group of the α-amylase family GH13. An ASKA yielding a high percentage of maltose upon its reaction on starch was chosen as a model to study the residues responsible for the biochemical properties. Four residues from conserved sequence regions (CSRs) were thus selected, and the mutants F113V (CSR-I), Y187F and L189I (CSR-II) and A161D (CSR-V) were characterised. Few changes in the optimum reaction temperature and pH were observed for all mutants. Whereas the Y187F (t1/2 43 h) and L189I (t1/2 36 h) mutants had a lower thermostability at 65°C than the native ASKA (t1/2 48 h), the mutants F113V and A161D exhibited an improved t1/2 of 51 h and 53 h, respectively. Among the mutants, only the A161D had a specific activity, k(cat) and k(cat)/K(m) higher (1.23-, 1.17- and 2.88-times, respectively) than the values determined for the ASKA. The replacement of the Ala-161 in the CSR-V with an aspartic acid also caused a significant reduction in the ratio of maltose formed. This finding suggests the Ala-161 may contribute to the high maltose production of the ASKA.

Indexed as

Mutagenesis, Site-DirectedProtein Engineeringalpha-AmylasesAmino Acid SequenceAnoxybacillusBacillusBacterial ProteinsConserved SequenceEnzyme StabilityEscherichia coliGeobacillusHydrogen-Ion ConcentrationKineticsMaltoseMolecular Dynamics SimulationMolecular Sequence Dataalpha-AmylasesBacterial ProteinsMaltoseRecombinant ProteinsStarch

Identifiers

PMID25069018
PMCPMC5376179
OpenAlexW1968421605

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.