Evidence map›Paper›PMID 25066955›Full record

ArticleProtein science : a publication of the Protein Society2014

Structural and functional analysis show that the Escherichia coli uncharacterized protein YjcS is likely an alkylsulfatase.

Yajing Liang, Zengqiang Gao, Yuhui Dong, Quansheng Liu

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Whole-cell electric sensor for determination of sodium dodecyl sulfate.World journal of microbiology & biotechnology · 2022
    Article
  6. Article
  7. The eukaryotic enzyme Bds1 is an alkyl but not an aryl sulfohydrolase.Biochemical and biophysical research communications · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yajing LiangSchool of Life Sciences, University of Science and Technology of China, Hefei, 230027, People's Republic of China.
Zengqiang Gao
Yuhui Dong
Quansheng Liu

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sodium dodecyl sulfate (SDS) is a widely used anionic surfactant in industry and research settings, and is known to have a detrimental effect to the environment. The pathway of SDS degradation by bacteria is initiated by an alkylsulfatase and the oxidized product, 1-dodecanoic acid, subsequently enters into the β-oxidation pathway and is used as a carbon source. In this work, we solved the crystal structure of Escherichia coli uncharacterized protein YjcS and identified that it belongs to the Type III alkylsulfatase with a signal peptide (residues 1-29) at the N terminus. YjcS hydrolyzed SDS and the double mutant D184N-H185A located in the conserved HXHXDH catalytic motif abolished this activity.

Indexed as

Amino Acid MotifsCatalytic DomainCrystallography, X-RayEscherichia coliEscherichia coli ProteinsModels, MolecularMolecular Sequence DataMutationProtein Structure, TertiarySodium Dodecyl SulfateSulfatasesalkylsulfataseEscherichia coli ProteinsSodium Dodecyl SulfateSulfatasesalkylsulfatasehydrolasemetalloenzymemetallo-β-lactamaseX-ray crystallography

Identifiers

PMID25066955
PMCPMC4287007

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.