Evidence map›Paper›PMID 25064127›Full record

ArticleNature medicine2014

Regulation of the hepatitis C virus RNA replicase by endogenous lipid peroxidation.

Daisuke Yamane, David R McGivern, Eliane Wauthier, MinKyung Yi, Victoria J Madden, Christoph Welsch, Iris Antes, Yahong Wen, Pauline E Chugh, Charles E McGee and 14 more

Open access · greenAbstract read
In one paragraph

Article in Nature medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 154 citations in OpenAlex.

  1. Article
  2. Article
  3. The low-density lipoprotein receptor LDLR mediates cellular entry of nonenveloped hepatitis A virus.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Fueling Death: The Metabolic Control of Ferroptosis.Advances in experimental medicine and biology · 2026
    Review
  6. Review
  7. Ferroptosis: biology and role in liver disease.Journal of gastroenterology · 2025
    Review
  8. Article
  9. Review
  10. Article
  11. Thio-ProTide strategy: A novel HActa pharmaceutica Sinica. B · 2024
    Article
  12. Article
  13. Review
  14. Novel Pyrazino[1,2-Viruses · 2024
    Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 7 institutions in 3 countries.

Daisuke Yamane1] Department of Medicine, Division of Infectious Diseases, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
David R McGivern1] Department of Medicine, Division of Infectious Diseases, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Eliane Wauthier1] Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Department of Cell Biology and Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
MinKyung YiDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Victoria J MaddenDepartment of Pathology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.ORCID 0000000279097743
Christoph WelschDepartment of Internal Medicine I, J.W. Goethe University Hospital, Frankfurt, Germany.
Iris AntesCenter for Integrated Protein Science Munich (CIPSM), Department of Life Sciences, Technical University Munich, Freising, Germany.
Yahong WenDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, Indiana, USA.
Pauline E Chugh1] Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Department of Microbiology and Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Charles E McGeeDepartment of Genetics, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Douglas G WidmanDepartment of Epidemiology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Ichiro MisumiDepartment of Genetics, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Sibali Bandyopadhyay1] School of Biology, Georgia Institute of Technology, Atlanta, Georgia, USA. [2] Parker H. Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, Georgia, USA.
Seungtaek Kim1] Department of Medicine, Division of Infectious Diseases, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [3] Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul, Korea.
Tetsuro Shimakami1] Department of Medicine, Division of Infectious Diseases, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Tsunekazu Oikawa1] Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Department of Cell Biology and Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Jason K Whitmire1] Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Department of Microbiology and Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [3] Department of Genetics, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Mark T Heise1] Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Department of Genetics, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Dirk P Dittmer1] Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Department of Microbiology and Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
C Cheng KaoDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, Indiana, USA.
Stuart M PitsonCentre for Cancer Biology, SA Pathology, Adelaide, South Australia, Australia.
Alfred H Merrill1] School of Biology, Georgia Institute of Technology, Atlanta, Georgia, USA. [2] Parker H. Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, Georgia, USA.
Lola M Reid1] Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Department of Cell Biology and Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Stanley M Lemon1] Department of Medicine, Division of Infectious Diseases, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [2] Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. [3] Department of Microbiology and Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
University of North Carolina at Chapel Hill · USGeorgia Institute of Technology · USIndiana University Bloomington · USCenter for Integrated Protein Science Munich · DEGoethe University Frankfurt · DESouth Australia Pathology · AUThe University of Texas Medical Branch at Galveston · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
STEROL LIPIDSU54GM069338 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DENNIS, EDWARD A · 2003 to 2013
$72.2M
PILOT AND FEASIBILITY STUDIESP30DK034987 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROBERT S. SANDLER · 1985 to 2026
$30.5M
Proteomics Pathway DiscoveryU19AI109965 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DUNCAN, JOSEPH A · 2014 to 2018
$14.9M
ART Modulation of Viral Pathogenesis in Oral EpitheliaR01DE018304 · NIDCR · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DITTMER, DIRK P · 2007 to 2025
$6.9M
Membrane Hijacking: Biogenesis and Fate of Quasi-Enveloped HepatovirusR01AI103083 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LEMON, STANLEY M. · 2012 to 2021
$4.0M
Micro-RNA 122 and Chronic Hepatitis CR01AI095690 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LEMON, STANLEY M. · 2011 to 2020
$3.7M
Murine Model of HCV-Associated Human Liver CancerR01CA164029 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LEMON, STANLEY M., SU, LISHAN · 2012 to 2016
$2.3M
Function of NS2 in Hepatitis C Virus Assembly and ReleaseR01AI075090 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI YI, MINKYUNG · 2008 to 2012
$1.6M
RNA-dependent RNA Synthesis by the Hepatitis C VirusR01AI073335 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI KAO, CHENG C · 2008 to 2012
$1.5M
UK SPORE in Gastrointestinal CancerP20CA150343 · NCI · UNIVERSITY OF KENTUCKY · PI EVERS, BERNARD MARK · 2009 to 2011
$1.5M
NCI NIH HHS P20 CA150343NCI NIH HHS P30 CA016086NCI NIH HHS P30-CA016086NCI NIH HHS R01 CA164029NCI NIH HHS R01-CA164029NCI NIH HHS R21-CA182322NIAID NIH HHS F32-AI094941NIAID NIH HHS P30 AI050410NIAID NIH HHS R01 AI073335NIAID NIH HHS R01-AI073335NIAID NIH HHS R01 AI075090NIAID NIH HHS R01-AI075090NIAID NIH HHS R01 AI095690NIAID NIH HHS R01-AI095690NIAID NIH HHS R01 AI103083NIAID NIH HHS U19 AI109965NIAID NIH HHS U19-AI109965NIDCR NIH HHS R01 DE018304NIDCR NIH HHS R01-DE018304NIDDK NIH HHS P30 DK034987NIGMS NIH HHS U54 GM069338NIGMS NIH HHS U54-GM069338
6 · The paper itself

Abstract

Oxidative tissue injury often accompanies viral infection, yet there is little understanding of how it influences virus replication. We show that multiple hepatitis C virus (HCV) genotypes are exquisitely sensitive to oxidative membrane damage, a property distinguishing them from other pathogenic RNA viruses. Lipid peroxidation, regulated in part through sphingosine kinase-2, severely restricts HCV replication in Huh-7 cells and primary human hepatoblasts. Endogenous oxidative membrane damage lowers the 50% effective concentration of direct-acting antivirals in vitro, suggesting critical regulation of the conformation of the NS3-4A protease and the NS5B polymerase, membrane-bound HCV replicase components. Resistance to lipid peroxidation maps genetically to transmembrane and membrane-proximal residues within these proteins and is essential for robust replication in cell culture, as exemplified by the atypical JFH1 strain of HCV. Thus, the typical, wild-type HCV replicase is uniquely regulated by lipid peroxidation, providing a mechanism for attenuating replication in stressed tissue and possibly facilitating long-term viral persistence.

Indexed as

Lipid PeroxidationOxidative StressAdaptor Proteins, Signal TransducingAntiviral AgentsCell LineCell MembraneDEAD-box RNA HelicasesHepacivirusHepatitis CHepatocytesHumansNucleoside-TriphosphatasePhosphotransferases (Alcohol Group Acceptor)RNA-Dependent RNA PolymeraseRNA InterferenceRNA, Small InterferingAdaptor Proteins, Signal TransducingAntiviral AgentsDEAD-box RNA HelicasesNS3 protein, hepatitis C virusNS4A protein, flavivirusNS-5 protein, hepatitis C virusNucleoside-TriphosphatasePhosphotransferases (Alcohol Group Acceptor)RNA-Dependent RNA PolymeraseRNA, Small InterferingSerine EndopeptidasesSphingosine KinaseSPHKAP protein, humanViral Nonstructural ProteinsViral Proteases

Identifiers

PMID25064127
PMCPMC4126843
OpenAlexW2011677146

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.