ArticleNature genetics2014
The genome of the stress-tolerant wild tomato species Solanum pennellii.
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Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 226 papers, 1 of them a synthesis that pooled it.
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226citing papers in PubMed, 1 pooled it
15.8field-weighted citation impact, top 1% of its field
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Who cites it
226 citing papers in PubMed, 1 synthesis or guideline pooled it, 499 citations in OpenAlex.
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- Co-option of transcription factors drives evolution of quantitative disease resistance against a necrotrophic pathogen.The Plant cell · 2025Article
- Tm-1 back in business: an allele from Solanum pennellii accessions plays a major role in ToBRFV resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Phylogenomic and super-pangenome analyses unveil the genetic landscape of tomato evolution and domestication.Plant biotechnology journal · 2025Article
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- Genomics-assisted breeding for designing salinity-smart future crops.Plant biotechnology journal · 2025Review
- Copy Number Variation Shapes Structural Genomic Diversity Associated With Ecological Adaptation in the Wild Tomato Solanum chilense.Molecular biology and evolution · 2025Article
166 more citing papers are in PubMed but not listed here.
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Authors and funding
43 authors at 14 institutions in 9 countries.
Anthony Bolger1] Department of Metabolic Networks, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany. [2] Institute for Biology I, Institute for Botany and Molecular Genetics (IBMG), RWTH Aachen University, Aachen, Germany.
Federico Scossa1] Department of Molecular Physiology, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany. [2] Consiglio per la Ricerca e la Sperimentazione in Agricoltura, Centro di Ricerca per l'Orticoltura, Pontecagnano, Italy.
Marie E Bolger1] Department of Metabolic Networks, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany. [2] Institut für Bio- und Geowissenschaften 2 (IBG-2) Plant Sciences, Forschungszentrum Jülich, Jülich, Germany.
Christa LanzDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Florian MaumusFrench National Institute for Agricultural Research (INRA), UR1164 Research Unit in Genomics Info (URGI), INRA de Versailles-Grignon, Versailles, France.
Takayuki TohgeDepartment of Molecular Physiology, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Hadi QuesnevilleFrench National Institute for Agricultural Research (INRA), UR1164 Research Unit in Genomics Info (URGI), INRA de Versailles-Grignon, Versailles, France.
Saleh AlseekhDepartment of Molecular Physiology, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Iben SørensenDepartment of Plant Biology, Cornell University, Ithaca, New York, USA.
Gabriel LichtensteinInstituto de Biotecnología, Centro de Investigación en Ciencias Veterinarias y Agronómicas (CICVyA)-Instituto Nacional de Tecnología Agropecuaria (INTA) and Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Castelar, Argentina.ORCID 0000000229746717
Eric A FichDepartment of Plant Biology, Cornell University, Ithaca, New York, USA.
Mariana ConteInstituto de Biotecnología, Centro de Investigación en Ciencias Veterinarias y Agronómicas (CICVyA)-Instituto Nacional de Tecnología Agropecuaria (INTA) and Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Castelar, Argentina.
Heike KellerDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Korbinian Schneeberger1] Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany. [2] Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Rainer Schwacke1] Department of Metabolic Networks, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany. [2] Institut für Bio- und Geowissenschaften 2 (IBG-2) Plant Sciences, Forschungszentrum Jülich, Jülich, Germany.
Itai OfnerFaculty of Agriculture, Hebrew University of Jerusalem, Rehovot, Israel.
Julia VrebalovBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York, USA.
Yimin XuBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York, USA.
Sonia Osorio1] Department of Molecular Physiology, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany. [2] Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora', Department of Molecular Biology and Biochemistry, University of Málaga, Málaga, Spain.
Saulo Alves AflitosPlant Research International, Wageningen University and Research Centre, Wageningen, the Netherlands.ORCID 0000000291795309
Elio SchijlenPlant Research International, Wageningen University and Research Centre, Wageningen, the Netherlands.
José M Jiménez-Goméz1] Department of Plant Breeding and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany. [2] INRA, UMR 1318, Institut Jean-Pierre Bourgin, Versailles, France.
Malgorzata RyngajlloDepartment of Metabolic Networks, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Seisuke KimuraDepartment of Plant Biology, University of California, Davis, Davis, California, USA.ORCID 0000000267963675
Ravi KumarDepartment of Plant Biology, University of California, Davis, Davis, California, USA.
Daniel Koenig1] Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany. [2] Department of Plant Biology, University of California, Davis, Davis, California, USA.
Lauren R HeadlandDepartment of Plant Biology, University of California, Davis, Davis, California, USA.
Julin N MaloofDepartment of Plant Biology, University of California, Davis, Davis, California, USA.
Neelima SinhaDepartment of Plant Biology, University of California, Davis, Davis, California, USA.
Roeland C H J van Ham1] Plant Research International, Wageningen University and Research Centre, Wageningen, the Netherlands. [2].
René Klein LankhorstPlant Research International, Wageningen University and Research Centre, Wageningen, the Netherlands.
Linyong MaoBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York, USA.
Alexander VogelInstitute for Biology I, Institute for Botany and Molecular Genetics (IBMG), RWTH Aachen University, Aachen, Germany.
Borjana ArsovaEntwicklungs und Molekularbiologie der Pflanzen, Heinrich Heine Universität, Düsseldorf, Germany.
Ralph PanstrugaInstitute for Biology I, Unit of Plant Molecular Cell Biology, RWTH Aachen University, Aachen, Germany.
Zhangjun Fei1] Department of Metabolic Networks, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany. [2] Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York, USA. [3] US Department of Agriculture Robert W. Holley Centre for Agriculture and Health, Ithaca, New York, USA.
Jocelyn K C RoseDepartment of Plant Biology, Cornell University, Ithaca, New York, USA.
Dani ZamirFaculty of Agriculture, Hebrew University of Jerusalem, Rehovot, Israel.
Fernando CarrariInstituto de Biotecnología, Centro de Investigación en Ciencias Veterinarias y Agronómicas (CICVyA)-Instituto Nacional de Tecnología Agropecuaria (INTA) and Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Castelar, Argentina.
James J Giovannoni1] Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York, USA. [2] US Department of Agriculture Robert W. Holley Centre for Agriculture and Health, Ithaca, New York, USA.
Detlef WeigelDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Björn Usadel1] Department of Metabolic Networks, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany. [2] Institute for Biology I, Institute for Botany and Molecular Genetics (IBMG), RWTH Aachen University, Aachen, Germany. [3] Institut für Bio- und Geowissenschaften 2 (IBG-2) Plant Sciences, Forschungszentrum Jülich, Jülich, Germany.
Alisdair R FernieDepartment of Molecular Physiology, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Cornell University · USMax Planck Institute of Molecular Plant Physiology · DEMax Planck Institute for Developmental Biology · DEUniversity of California, Davis · USConsejo Nacional de Investigaciones Científicas y Técnicas · ARWageningen University & Research · NLForschungszentrum Jülich · DEHebrew University of Jerusalem · ILInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRRWTH Aachen University · DECentro di Ricerca per l’Orticoltura · ITHeinrich Heine University Düsseldorf · DEInstitut Jean-Pierre Bourgin · FRResearch International (United States) · US
Funding
No grant is acknowledged in the PubMed record.
Abstract
Solanum pennellii is a wild tomato species endemic to Andean regions in South America, where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and unusual morphology, it is an important donor of germplasm for the cultivated tomato Solanum lycopersicum. Introgression lines (ILs) in which large genomic regions of S. lycopersicum are replaced with the corresponding segments from S. pennellii can show remarkably superior agronomic performance. Here we describe a high-quality genome assembly of the parents of the IL population. By anchoring the S. pennellii genome to the genetic map, we define candidate genes for stress tolerance and provide evidence that transposable elements had a role in the evolution of these traits. Our work paves a path toward further tomato improvement and for deciphering the mechanisms underlying the myriad other agronomic traits that can be improved with S. pennellii germplasm.
Indexed as
Genome, PlantChromosome MappingChromosomes, PlantDNA Transposable ElementsQuantitative Trait LociSolanumStress, PhysiologicalDNA Transposable Elements
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