Evidence map›Paper›PMID 25063993›Full record

ArticleThe Journal of biological chemistry2014

Solution NMR structures of Pyrenophora tritici-repentis ToxB and its inactive homolog reveal potential determinants of toxin activity.

Afua Nyarko, Kiran K Singarapu, Melania Figueroa, Viola A Manning, Iovanna Pandelova, Thomas J Wolpert, Lynda M Ciuffetti, Elisar Barbar

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
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  10. Heterologous Expression of theFrontiers in microbiology · 2019
    Article
  11. Inverse gene-for-gene interactions contribute additively to tan spot susceptibility in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
  12. Effectors of Filamentous Plant Pathogens: Commonalities amid Diversity.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  13. Recognition of theThe Plant cell · 2017
    Article
  14. Article
  15. Article
  16. Article
  17. Residue-level global and local ensemble-ensemble comparisons of protein domains.Protein science : a publication of the Protein Society · 2015
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Afua NyarkoFrom the Department of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon 97331.
Kiran K Singaraputhe Center for NMR and Structural Chemistry, Indian Institute of Chemical Technology, Uppal Road, Tarnaka, Hyderabad 500007, India, and.
Melania Figueroathe Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331.
Viola A Manningthe Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331.
Iovanna Pandelovathe Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331.
Thomas J Wolpertthe Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331.
Lynda M Ciuffettithe Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331 ciuffetL@science.oregonstate.edu.
Elisar BarbarFrom the Department of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon 97331, barbare@science.oregonstate.edu.

Funding

PHS HHS NIEHS 00210
6 · The paper itself

Abstract

Pyrenophora tritici-repentis Ptr ToxB (ToxB) is a proteinaceous host-selective toxin produced by Pyrenophora tritici-repentis (P. tritici-repentis), a plant pathogenic fungus that causes the disease tan spot of wheat. One feature that distinguishes ToxB from other host-selective toxins is that it has naturally occurring homologs in non-pathogenic P. tritici-repentis isolates that lack toxic activity. There are no high-resolution structures for any of the ToxB homologs, or for any protein with >30% sequence identity, and therefore what underlies activity remains an open question. Here, we present the NMR structures of ToxB and its inactive homolog Ptr toxb. Both proteins adopt a β-sandwich fold comprising three strands in each half that are bridged together by two disulfide bonds. The inactive toxb, however, shows higher flexibility localized to the sequence-divergent β-sandwich half. The absence of toxic activity is attributed to a more open structure in the vicinity of one disulfide bond, higher flexibility, and residue differences in an exposed loop that likely impacts interaction with putative targets. We propose that activity is regulated by perturbations in a putative active site loop and changes in dynamics distant from the site of activity. Interestingly, the new structures identify AvrPiz-t, a secreted avirulence protein produced by the rice blast fungus, as a structural homolog to ToxB. This homology suggests that fungal proteins involved in either disease susceptibility such as ToxB or resistance such as AvrPiz-t may have a common evolutionary origin.

Indexed as

Crystallography, X-RayEvolution, MolecularFungal ProteinsHost-Pathogen InteractionsMagnetic Resonance SpectroscopyPlant DiseasesProtein FoldingProtein Structure, SecondarySolutionsTriticumFungal ProteinsSolutionsToxB protein, Pyrenophora tritici-repentisHost-Pathogen InteractionNuclear Magnetic Resonance (NMR)PathogenesisProtein DynamicProtein StructureToxin

Identifiers

PMID25063993
PMCPMC4162193

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.