Evidence map›Paper›PMID 25063677›Full record

ArticleThe EMBO journal2014

TLR sorting by Rab11 endosomes maintains intestinal epithelial-microbial homeostasis.

Shiyan Yu, Yingchao Nie, Byron Knowles, Ryotaro Sakamori, Ewa Stypulkowski, Chirag Patel, Soumyashree Das, Veronique Douard, Ronaldo P Ferraris, Edward M Bonder and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
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  7. AFrontiers in genetics · 2025
    Article
  8. Article
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  11. Article
  12. Review
  13. Rab11FIP1-deficient mice develop spontaneous inflammation and show increased susceptibility to colon damage.American journal of physiology. Gastrointestinal and liver physiology · 2022
    Article
  14. Article
  15. 1,25-Dihydroxyvitamin DJournal of cellular physiology · 2021
    Article
  16. Review
  17. Review
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Shiyan YuDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Yingchao NieProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
Byron KnowlesExperimental Surgery, Vanderbilt University Medical Center, Nashville, TN, USA.
Ryotaro SakamoriDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Ewa StypulkowskiDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Chirag PatelDepartment of Pharmacology and Physiology, Rutgers-New Jersey Medical School, Newark, NJ, USA.
Soumyashree DasDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
Veronique DouardDepartment of Pharmacology and Physiology, Rutgers-New Jersey Medical School, Newark, NJ, USA.
Ronaldo P FerrarisDepartment of Pharmacology and Physiology, Rutgers-New Jersey Medical School, Newark, NJ, USA.
Edward M BonderDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA.
James R GoldenringExperimental Surgery, Vanderbilt University Medical Center, Nashville, TN, USA.
Yicktung Tony IpProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
Nan GaoDepartment of Biological Sciences, Rutgers University, Newark, NJ, USA Rutgers Cancer Institute of New Jersey, New Brunswick, NJ, USA ngao@andromeda.rutgers.edu.
Rutgers, The State University of New Jersey · USRutgers New Jersey Medical SchoolUniversity of Massachusetts Chan Medical School · USVanderbilt University Medical Center · USRutgers Cancer Institute of New Jersey

Funding

Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007347 · NIGMS · VANDERBILT UNIVERSITY · PI WILLIAMS, CHRISTOPHER S. · 1985 to 2023
$26.3M
PILOT AND FEASIBILITY PROGRAMP30DK032520 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CZECH, MICHAEL P · 1986 to 2010
$14.6M
University of Massachusetts Center for Clinical and Translational ScienceUL1TR000161 · NCATS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUZURIAGA, KATHERINE F · 2012 to 2015
$11.0M
SMALL GTP BINDING PROTEINS IN GASTROINTESTINAL MUCOSAR01DK048370 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI GOLDENRING, JAMES RICHARD · 1994 to 2025
$10.1M
Genetic analysis of damage-induced intestinal stem cell division in DrosophilaR01DK083450 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI IP, Y. TONY · 2010 to 2024
$4.7M
Molecular characteristics of the apical recycling systemR01DK070856 · NIDDK · VANDERBILT UNIVERSITY · PI GOLDENRING, JAMES RICHARD · 2006 to 2014
$3.1M
Endosomal Control of Microbe-Host HomeostasisR01DK102934 · NIDDK · RUTGERS THE STATE UNIV OF NJ NEWARK · PI GAO, NAN · 2014 to 2018
$1.8M
Regulation of Apical-Basal Cell polarity during Intestinal Epithelial MorphogenesK01DK085194 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI GAO, NAN · 2010 to 2014
$728k
Abrogating a survival pathway in early colon cancer cellsR21CA178599 · NCI · RUTGERS THE STATE UNIV OF NJ NEWARK · PI GAO, NAN · 2013 to 2014
$366k
The Division and Homeostasis of Gut Progenitor CellsR03DK093809 · NIDDK · RUTGERS THE STATE UNIV OF NJ NEWARK · PI GAO, NAN · 2012 to 2013
$152k
Molecular characteristics of the apical recycling systemR56DK070856 · NIDDK · VANDERBILT UNIVERSITY · PI GOLDENRING, JAMES RICHARD · 2005 to 2005
$150k
NCATS NIH HHS UL1 TR000161NCATS NIH HHS UL1TR000161NCI NIH HHS CA178599NCI NIH HHS R21 CA178599NIDDK NIH HHS DK070856NIDDK NIH HHS DK085194NIDDK NIH HHS DK093809NIDDK NIH HHS DK102934NIDDK NIH HHS DK48370NIDDK NIH HHS DK83450NIDDK NIH HHS K01 DK085194NIDDK NIH HHS P30 DK032520NIDDK NIH HHS P30 DK058404NIDDK NIH HHS R01 DK048370NIDDK NIH HHS R01 DK070856NIDDK NIH HHS R01 DK083450NIDDK NIH HHS R01 DK102934NIDDK NIH HHS R03 DK093809NIDDK NIH HHS R56 DK070856NIGMS NIH HHS T32 GM007347
6 · The paper itself

Abstract

Compartmentalization of Toll-like receptors (TLRs) in intestinal epithelial cells (IECs) regulates distinct immune responses to microbes; however, the specific cellular machinery that controls this mechanism has not been fully identified. Here we provide genetic evidences that the recycling endosomal compartment in enterocytes maintains a homeostatic TLR9 intracellular distribution, supporting mucosal tolerance to normal microbiota. Genetic ablation of a recycling endosome resident small GTPase, Rab11a, a gene adjacent to a Crohn's disease risk locus, in mouse IECs and in Drosophila midgut caused epithelial cell-intrinsic cytokine production, inflammatory bowel phenotype, and early mortality. Unlike wild-type controls, germ-free Rab11a-deficient mouse intestines failed to tolerate the intraluminal stimulation of microbial agonists. Thus, Rab11a endosome controls intestinal host-microbial homeostasis at least partially via sorting TLRs.

Indexed as

AnimalsDrosophilaDrosophila ProteinsEndosomesEnterocytesGene DeletionHomeostasisIntestinal MucosaMiceMicrobiotarab11 GTP-Binding Proteinsrab GTP-Binding ProteinsReceptors, ImmunologicToll-Like Receptor 9Drosophila Proteinsrab11 GTP-Binding ProteinsRab11 protein, Drosophilarab GTP-Binding ProteinsReceptors, ImmunologicTlr9 protein, mouseToll-Like Receptor 9enterocyteinflammationintestinal homeostasisRab11aToll‐like receptor

Identifiers

PMID25063677
PMCPMC4195784
OpenAlexW1988404061

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.