Evidence map›Paper›PMID 25063321›Full record

ArticleBMC genomics2014

The genome and occlusion bodies of marine Penaeus monodon nudivirus (PmNV, also known as MBV and PemoNPV) suggest that it should be assigned to a new nudivirus genus that is distinct from the terrestrial nudiviruses.

Yi-Ting Yang, Der-Yen Lee, Yongjie Wang, Jer-Ming Hu, Wen-Hsiung Li, Jiann-Horng Leu, Geen-Dong Chang, Huei-Mien Ke, Shin-Ting Kang, Shih-Shun Lin and 2 more

Abstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. The complete genome sequence ofMicrobial genomics · 2025
    Article
  2. Article
  3. Functional characterization ofJournal of virology · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Nudivirus Remnants in the Genomes of Arthropods.Genome biology and evolution · 2020
    Article
  10. ICTV Virus Taxonomy Profile:The Journal of general virology · 2020
    Article
  11. Article
  12. The dynamic evolution of Drosophila innubila Nudivirus.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2018
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yi-Ting Yang
Der-Yen Lee
Yongjie Wang
Jer-Ming Hu
Wen-Hsiung Li
Jiann-Horng Leu
Geen-Dong Chang
Huei-Mien Ke
Shin-Ting Kang
Shih-Shun Lin
Guang-Hsiung KouInstitute of Bioinformatics and Biosignal Transduction, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan, Taiwan. ghkou@ntu.edu.tw.
Chu-Fang Lo

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPenaeus monodon nudivirus (PmNV) is the causative agent of spherical baculovirosis in shrimp (Penaeus monodon). This disease causes significant mortalities at the larval stage and early postlarval (PL) stage and may suppress growth and reduce survival and production in aquaculture. The nomenclature and classification status of PmNV has been changed several times due to morphological observation and phylogenetic analysis of its partial genome sequence. In this study, we therefore completed the genome sequence and constructed phylogenetic trees to clarify PmNV's taxonomic position. To better understand the characteristics of the occlusion bodies formed by this marine occluded virus, we also compared the chemical properties of the polyhedrin produced by PmNV and the baculovirus AcMNPV (Autographa californica nucleopolyhedrovirus).

resultsWe used next generation sequencing and traditional PCR methods to obtain the complete PmNV genome sequence of 119,638 bp encoding 115 putative ORFs. Phylogenetic tree analysis showed that several PmNV genes and sequences clustered with the non-occluded nudiviruses and not with the baculoviruses. We also investigated the characteristics of PmNV polyhedrin, which is a functionally important protein and the major component of the viral OBs (occlusion bodies). We found that both recombinant PmNV polyhedrin and wild-type PmNV OBs were sensitive to acid conditions, but unlike the baculoviral OBs, they were not susceptible to alkali treatment.

conclusionsFrom the viral genome features and phylogenetic analysis we conclude that PmNV is not a baculovirus, and that it should be assigned to the proposed Nudiviridae family with the other nudiviruses, but into a distinct new genus (Gammanudivirus).

Indexed as

GenomicsAnimalsAquatic OrganismsBaculoviridaeDNA-Directed RNA PolymerasesGenome, ViralHigh-Throughput Nucleotide SequencingMolecular Sequence DataMouthOpen Reading FramesPenaeidaePhylogenyProtein SubunitsRepetitive Sequences, Nucleic AcidSequence Homology, Nucleic AcidSpecies SpecificityDNA-Directed RNA PolymerasesProtein SubunitsViral Proteins

Identifiers

PMID25063321
PMCPMC4132918

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.