Evidence map›Paper›PMID 25062267›Full record

ArticlePloS one2014

Structural characterization of the Saccharomyces cerevisiae THO complex by small-angle X-ray scattering.

Jesper Buchhave Poulsen, Lee Edward Sanderson, Emil Dandanell Agerschou, Emil Dedic, Thomas Boesen, Ditlev E Brodersen

Erratum issuedAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. High-resolution NMR structures of the domains of Saccharomyces cerevisiae Tho1.Acta crystallographica. Section F, Structural biology communications · 2016
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

6 authors.

Jesper Buchhave PoulsenCentre for mRNP Biogenesis and Metabolism, Aarhus University, Aarhus, Denmark.
Lee Edward SandersonCentre for mRNP Biogenesis and Metabolism, Aarhus University, Aarhus, Denmark.
Emil Dandanell AgerschouCentre for mRNP Biogenesis and Metabolism, Aarhus University, Aarhus, Denmark.
Emil DedicCentre for mRNP Biogenesis and Metabolism, Aarhus University, Aarhus, Denmark.
Thomas BoesenPumpkin - Centre for Membrane Pumps in Cells and Disease, Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.
Ditlev E BrodersenCentre for mRNP Biogenesis and Metabolism, Aarhus University, Aarhus, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The THO complex participates during eukaryotic mRNA biogenesis in coupling transcription to formation and nuclear export of translation-competent messenger ribonucleoprotein particles. In Saccharomyces cerevisiae, THO has been defined as a heteropentamer composed of the Tho2p, Hpr1p, Tex1p, Mft1p, and Thp2p subunits and the overall three-dimensional shape of the complex has been established by negative stain electron microscopy. Here, we use small-angle X-ray scattering measured for isolated THO components (Mft1p and Thp2p) as well as THO subcomplexes (Mft1p-Thp2p and Mft1p-Thp2p-Tho2p) to construct structural building blocks that allow positioning of each subunit within the complex. To accomplish this, the individual envelopes determined for Mft1p and Thp2p are first fitted inside those of the Mft1p-Thp2p and Mft1p-Thp2p-Tho2p complexes. Next, the ternary complex structure is placed in the context of the five-component electron microscopy structure. Our model reveals not only the position of each protein in the THO complex relative to each other, but also shows that the pentamer is likely somewhat larger than what was observed by electron microscopy.

Indexed as

Amino Acid SequenceBinding SitesCarrier ProteinsDNA-Binding ProteinsMolecular Sequence DatamRNA Cleavage and Polyadenylation FactorsProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsScattering, Small AngleTranscription FactorsX-Ray DiffractionCarrier ProteinsDNA-Binding ProteinsHRP1 protein, S cerevisiaeMFT1 protein, S cerevisiaemRNA Cleavage and Polyadenylation FactorsSaccharomyces cerevisiae ProteinsTex1 protein, S cerevisiaeTHO2 protein, S cerevisiaeThp2 protein, S cerevisiaeTranscription Factors

Identifiers

PMID25062267
PMCPMC4111604

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.