Evidence map›Paper›PMID 25062256›Full record

Trial reportGenetic testing and molecular biomarkers2014

Identification of copy number variants through whole-exome sequencing in autosomal recessive nonsyndromic hearing loss.

Guney Bademci, Oscar Diaz-Horta, Shengru Guo, Duygu Duman, Derek Van Booven, Joseph Foster, Filiz Basak Cengiz, Susan Blanton, Mustafa Tekin

Open access · greenAbstract readClinical TrialMulticenter Study
In one paragraph

Trial report in Genetic testing and molecular biomarkers, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

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  12. Dysfunction ofProceedings of the National Academy of Sciences of the United States of America · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Guney Bademci1 John P. Hussmann Institute for Human Genomics, Miller School of Medicine, University of Miami , Miami, Florida.
Oscar Diaz-Horta
Shengru Guo
Duygu Duman
Derek Van Booven
Joseph Foster
Filiz Basak Cengiz
Susan Blanton
Mustafa Tekin
Ankara University · TRUniversity of Miami · US

Funding

A Collaborative Search for New Genes for Non-Syndromic DeafnessR01DC009645 · NIDCD · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MUSTAFA TEKIN · 2010 to 2026
$11.8M
NIDCD NIH HHS R01DC009645
6 · The paper itself

Abstract

Genetic variants account for more than half of the cases with congenital or prelingual onset hearing loss. Autosomal recessive nonsyndromic hearing loss (ARNSHL) is the most common subgroup. Whole-exome sequencing (WES) has been shown to be effective detecting deafness-causing single-nucleotide variants (SNVs) and insertion/deletions (INDELs). After analyzing the WES data for causative SNVs or INDELs involving previously reported deafness genes in 78 families with ARNSHL, we searched for copy number variants (CNVs) through two different tools in 24 families that remained unresolved. We detected large homozygous deletions in STRC and OTOA in single families. Thus, causative CNVs in known deafness genes explain 2 out of 78 (2.6%) families in our sample set. We conclude that CNVs can be reliably detected through WES and should be the part of pipelines used to clarify genetic basis of hearing loss.

Indexed as

DNA Copy Number VariationsExomeINDEL MutationFamilyFemaleGenetic Diseases, InbornGenome-Wide Association StudyGPI-Linked ProteinsHearing LossHumansIntercellular Signaling Peptides and ProteinsMaleMembrane ProteinsPedigreeGPI-Linked ProteinsIntercellular Signaling Peptides and ProteinsMembrane ProteinsOTOA protein, humanSTRC protein, human

Identifiers

PMID25062256
PMCPMC4150376
OpenAlexW2136049746

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.