ArticleEmerging infectious diseases2014
Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis.
Article in Emerging infectious diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.
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Who cites it
84 citing papers in PubMed.
- Review
- Isolation, antibiogram and whole genome sequence analysis of Pasteurella multocida type A from layer birds.PloS one · 2026Article
- Advancements in Detection Methods forPathogens (Basel, Switzerland) · 2024Review
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- Implementation of a high-throughput whole genome sequencing approach with the goal of maximizing efficiency and cost effectiveness to improve public health.Microbiology spectrum · 2024Article
- Use of whole genome sequencing for surveillance and control of foodborne diseases:Frontiers in microbiology · 2024Review
- SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method.Virus evolution · 2024Article
- Review
- Multidrug-ResistantAntibiotics (Basel, Switzerland) · 2023Article
- Implementation of routine genomic surveillance provided insights into a locally acquired outbreak caused by a rare clade ofMicrobial genomics · 2023Article
- Drug-food Interactions in the Era of Molecular Big Data, Machine Intelligence, and Personalized Health.Recent advances in food, nutrition & agriculture · 2022Review
- Comparing Multiple Locus Variable-Number Tandem Repeat Analyses with Whole-Genome Sequencing as Typing Method for Salmonella Enteritidis Surveillance in The Netherlands, January 2019 to March 2020.Microbiology spectrum · 2022Article
- Genome-Wide Searching Single Nucleotide-Polymorphisms (SNPs) and SNPs-Targeting a Multiplex Primer for Identification of CommonPathogens (Basel, Switzerland) · 2022Article
- Through the Looking Glass: Genome, Phenome, and Interactome ofPathogens (Basel, Switzerland) · 2022Review
- Whole-Genome Analysis of Multidrug-ResistantPathogens (Basel, Switzerland) · 2021Article
- Epidemiological Analysis of Salmonella enterica subsp.Microbiology spectrum · 2021Article
- How To Prepare for the Unexpected: a Public Health Laboratory Response.Clinical microbiology reviews · 2021Review
- Diversity of Plasmids and Genes Encoding Resistance to Extended-Spectrum β-Lactamase inMicroorganisms · 2021Article
- Comparison of Molecular and In SilicoMicroorganisms · 2021Article
- Comparison of conventional molecular and whole-genome sequencing methods for subtyping Salmonella enterica serovar Enteritidis strains from Tunisia.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2021Article
24 more citing papers are in PubMed but not listed here.
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Authors and funding
13 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
For Salmonella enterica serovar Enteritidis, 85% of isolates can be classified into 5 pulsed-field gel electrophoresis (PFGE) types. However, PFGE has limited discriminatory power for outbreak detection. Although whole-genome sequencing has been found to improve discrimination of outbreak clusters, whether this procedure can be used in real-time in a public health laboratory is not known. Therefore, we conducted a retrospective and prospective analysis. The retrospective study investigated isolates from 1 confirmed outbreak. Additional cases could be attributed to the outbreak strain on the basis of whole-genome data. The prospective study included 58 isolates obtained in 2012, including isolates from 1 epidemiologically defined outbreak. Whole-genome sequencing identified additional isolates that could be attributed to the outbreak, but which differed from the outbreak-associated PFGE type. Additional putative outbreak clusters were detected in the retrospective and prospective analyses. This study demonstrates the practicality of implementing this approach for outbreak surveillance in a state public health laboratory.
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