Evidence map›Paper›PMID 25061751›Full record

ArticlePloS one2014

Physiological regulation of isocitrate dehydrogenase and the role of 2-oxoglutarate in Prochlorococcus sp. strain PCC 9511.

María Agustina Domínguez-Martín, Antonio López-Lozano, Jesús Diez, Guadalupe Gómez-Baena, Oriol Alberto Rangel-Zúñiga, José Manuel García-Fernández

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. MarineMicrobiology spectrum · 2022
    Article
  3. Chemical science · 2022
    Article
  4. Characterization of NADFrontiers in nutrition · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Glucose Uptake inFrontiers in microbiology · 2017
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

María Agustina Domínguez-MartínDepartamento de Bioquímica y Biología Molecular, Universidad de Córdoba, Córdoba, Spain.
Antonio López-LozanoDepartamento de Bioquímica y Biología Molecular, Universidad de Córdoba, Córdoba, Spain.
Jesús DiezDepartamento de Bioquímica y Biología Molecular, Universidad de Córdoba, Córdoba, Spain.
Guadalupe Gómez-BaenaDepartamento de Bioquímica y Biología Molecular, Universidad de Córdoba, Córdoba, Spain.
Oriol Alberto Rangel-ZúñigaDepartamento de Bioquímica y Biología Molecular, Universidad de Córdoba, Córdoba, Spain.
José Manuel García-FernándezDepartamento de Bioquímica y Biología Molecular, Universidad de Córdoba, Córdoba, Spain.
University of Córdoba · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The enzyme isocitrate dehydrogenase (ICDH; EC 1.1.1.42) catalyzes the oxidative decarboxylation of isocitrate, to produce 2-oxoglutarate. The incompleteness of the tricarboxylic acids cycle in marine cyanobacteria confers a special importance to isocitrate dehydrogenase in the C/N balance, since 2-oxoglutarate can only be metabolized through the glutamine synthetase/glutamate synthase pathway. The physiological regulation of isocitrate dehydrogenase was studied in cultures of Prochlorococcus sp. strain PCC 9511, by measuring enzyme activity and concentration using the NADPH production assay and Western blotting, respectively. The enzyme activity showed little changes under nitrogen or phosphorus starvation, or upon addition of the inhibitors DCMU, DBMIB and MSX. Azaserine, an inhibitor of glutamate synthase, induced clear increases in the isocitrate dehydrogenase activity and icd gene expression after 24 h, and also in the 2-oxoglutarate concentration. Iron starvation had the most significant effect, inducing a complete loss of isocitrate dehydrogenase activity, possibly mediated by a process of oxidative inactivation, while its concentration was unaffected. Our results suggest that isocitrate dehydrogenase responds to changes in the intracellular concentration of 2-oxoglutarate and to the redox status of the cells in Prochlorococcus.

Indexed as

Bacterial ProteinsIsocitrate DehydrogenaseKetoglutaric AcidsNADPOxidation-ReductionProchlorococcusBacterial ProteinsIsocitrate DehydrogenaseKetoglutaric AcidsNADP

Identifiers

PMID25061751
PMCPMC4111581
OpenAlexW1980863322

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.