Evidence map›Paper›PMID 25061722›Full record

ArticleMolecules (Basel, Switzerland)2014

Transcriptional responses of the Bdtf1-deletion mutant to the phytoalexin brassinin in the necrotrophic fungus Alternaria brassicicola.

Yangrae Cho, Robin A Ohm, Rakshit Devappa, Hyang Burm Lee, Igor V Grigoriev, Bo Yeon Kim, Jong Seog Ahn

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Frontiers in plant science · 2023
    Article
  2. Article
  3. Responses of the Necrotrophic FungusFrontiers in plant science · 2020
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Yangrae ChoKorea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk 363-883, Korea. yangraec@kribb.re.kr.
Robin A OhmJoint Genome Institute, 2800 Mitchell Drive, Walnut Creek 94598, CA, USA. raohm@lbl.gov.
Rakshit DevappaKorea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk 363-883, Korea.
Hyang Burm LeeDivision of Applied Bioscience and Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Buk-Gu, Gwangju 500-757, Korea. hblee@chonnam.ac.kr.
Igor V GrigorievJoint Genome Institute, 2800 Mitchell Drive, Walnut Creek 94598, CA, USA. ivgrigoriev@lbl.gov.
Bo Yeon KimKorea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk 363-883, Korea. botaekim61@gmail.com.
Jong Seog AhnKorea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk 363-883, Korea. jsahn@kribb.re.kr.
Korea Research Institute of Bioscience and Biotechnology · KRJoint Genome Institute · USChonnam National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Brassica species produce the antifungal indolyl compounds brassinin and its derivatives, during microbial infection. The fungal pathogen Alternaria brassicicola detoxifies brassinin and possibly its derivatives. This ability is an important property for the successful infection of brassicaceous plants. Previously, we identified a transcription factor, Bdtf1, essential for the detoxification of brassinin and full virulence. To discover genes that encode putative brassinin-digesting enzymes, we compared gene expression profiles between a mutant strain of the transcription factor and wild-type A. brassicicola under two different experimental conditions. A total of 170 and 388 genes were expressed at higher levels in the mutants than the wild type during the infection of host plants and saprophytic growth in the presence of brassinin, respectively. In contrast, 93 and 560 genes were expressed, respectively, at lower levels in the mutant than the wild type under the two conditions. Fifteen of these genes were expressed at lower levels in the mutant than in the wild type under both conditions. These genes were assumed to be important for the detoxification of brassinin and included Bdtf1 and 10 putative enzymes. This list of genes provides a resource for the discovery of enzyme-coding genes important in the chemical modification of brassinin.

Indexed as

Gene DeletionGene Expression Regulation, FungalAlternariaBrassicaCluster AnalysisGene Expression ProfilingHost-Pathogen InteractionsIndolesPhytoalexinsSesquiterpenesThiocarbamatesTranscription, GeneticbrassininIndolesPhytoalexinsSesquiterpenesThiocarbamates

Identifiers

PMID25061722
PMCPMC6270968
OpenAlexW1980680430

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.