Evidence map›Paper›PMID 25060579›Full record

ReviewNature reviews. Immunology2014

Developmental gene networks: a triathlon on the course to T cell identity.

Mary A Yui, Ellen V Rothenberg

Abstract readReview
In one paragraph

Review in Nature reviews. Immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 208 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
208citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

208 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
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  4. Animals have expanded the evolutionary legacy of unicellular ancestors in blood cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  19. Linking DNA-packing density distribution and TAD boundary locations.Proceedings of the National Academy of Sciences of the United States of America · 2025
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148 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Mary A YuiDivision of Biology 156-29, California Institute of Technology, Pasadena, California 91125, USA.
Ellen V RothenbergDivision of Biology 156-29, California Institute of Technology, Pasadena, California 91125, USA.

Funding

Genomic site binding rules and regulatory factor function in developing T cellsR01HD076915 · NICHD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROTHENBERG, ELLEN V. · 2013 to 2017
$2.5M
Key nodes in the T-cell developmental gene regulatory networkR01AI095943 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROTHENBERG, ELLEN V. · 2011 to 2015
$2.0M
Early T cell checkpoint violation in NOD miceR01AI064590 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI YUI, MARY A · 2006 to 2010
$1.9M
Bcl11b in early T cell developmentR01AI083514 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROTHENBERG, ELLEN V. · 2011 to 2015
$1.8M
Bcl11b in early T cell developmentR56AI083514 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROTHENBERG, ELLEN V. · 2010 to 2010
$405k
NIAID NIH HHS AI064590NIAID NIH HHS AI083514NIAID NIH HHS AI095943NIAID NIH HHS R01 AI064590NIAID NIH HHS R01 AI083514NIAID NIH HHS R01 AI095943NIAID NIH HHS R56 AI083514NICHD NIH HHS HD076915NICHD NIH HHS R01 HD076915
6 · The paper itself

Abstract

Cells acquire their ultimate identities by activating combinations of transcription factors that initiate and sustain expression of the appropriate cell type-specific genes. T cell development depends on the progression of progenitor cells through three major phases, each of which is associated with distinct transcription factor ensembles that control the recruitment of these cells to the thymus, their proliferation, lineage commitment and responsiveness to T cell receptor signals, all before the allocation of cells to particular effector programmes. All three phases are essential for proper T cell development, as are the mechanisms that determine the boundaries between each phase. Cells that fail to shut off one set of regulators before the next gene network phase is activated are predisposed to leukaemic transformation.

Indexed as

AnimalsCell DifferentiationCell LineageCell Transformation, NeoplasticGene Regulatory NetworksHumansLeukemia, T-CellMiceReceptor, Notch1Receptors, Antigen, T-CellSignal TransductionStem CellsThymus GlandT-LymphocytesTranscription FactorsNOTCH1 protein, humanReceptor, Notch1Receptors, Antigen, T-CellTranscription Factors

Identifiers

PMID25060579
PMCPMC4153685

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.