Evidence map›Paper›PMID 25059668›Full record

ArticleThe Journal of biological chemistry2014

Amino acid derivatives as bitter taste receptor (T2R) blockers.

Sai P Pydi, Tyler Sobotkiewicz, Rohini Billakanti, Rajinder P Bhullar, Michele C Loewen, Prashen Chelikani

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 98 citations in OpenAlex.

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  18. Pharmacology of T2R Mediated Host-Microbe Interactions.Handbook of experimental pharmacology · 2022
    Article
  19. Bitter Taste Receptors in the Airway Cells Functions.Handbook of experimental pharmacology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sai P PydiFrom the Department of Oral Biology, University of Manitoba, Winnipeg, Manitoba R3E 0W4, the Manitoba Institute of Child Health, Winnipeg, Manitoba R3E 0W4, and.
Tyler SobotkiewiczFrom the Department of Oral Biology, University of Manitoba, Winnipeg, Manitoba R3E 0W4.
Rohini BillakantiFrom the Department of Oral Biology, University of Manitoba, Winnipeg, Manitoba R3E 0W4, the Manitoba Institute of Child Health, Winnipeg, Manitoba R3E 0W4, and.
Rajinder P BhullarFrom the Department of Oral Biology, University of Manitoba, Winnipeg, Manitoba R3E 0W4.
Michele C Loewenthe National Research Council of Canada, Saskatoon, Saskatchewan S7N 0W9, Canada.
Prashen ChelikaniFrom the Department of Oral Biology, University of Manitoba, Winnipeg, Manitoba R3E 0W4, the Manitoba Institute of Child Health, Winnipeg, Manitoba R3E 0W4, and Prashen.Chelikani@umanitoba.ca.
University of Manitoba · CASaskatchewan Research Council (Canada) · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In humans, the 25 bitter taste receptors (T2Rs) are activated by hundreds of structurally diverse bitter compounds. However, only five antagonists or bitter blockers are known. In this study, using molecular modeling guided site-directed mutagenesis, we elucidated the ligand-binding pocket of T2R4. We found seven amino acids located in the extracellular side of transmembrane 3 (TM3), TM4, extracellular loop 2 (ECL2), and ECL3 to be involved in T2R4 binding to its agonist quinine. ECL2 residues Asn-173 and Thr-174 are essential for quinine binding. Guided by a molecular model of T2R4, a number of amino acid derivatives were screened for their ability to bind to T2R4. These predictions were tested by calcium imaging assays that led to identification of γ-aminobutryic acid (GABA) and Nα,Nα-bis(carboxymethyl)-L-lysine (BCML) as competitive inhibitors of quinine-activated T2R4 with an IC50 of 3.2 ± 0.3 μM and 59 ± 18 nM, respectively. Interestingly, pharmacological characterization using a constitutively active mutant of T2R4 reveals that GABA acts as an antagonist, whereas BCML acts as an inverse agonist on T2R4. Site-directed mutagenesis confirms that the two novel bitter blockers share the same orthosteric site as the agonist quinine. The signature residues Ala-90 and Lys-270 play important roles in interacting with BCML and GABA, respectively. This is the first report to characterize a T2R endogenous antagonist and an inverse agonist. The novel bitter blockers will facilitate physiological studies focused on understanding the roles of T2Rs in extraoral tissues.

Indexed as

TasteAlanineAmino AcidsAsparagineBinding SitesGABA Agentsgamma-Aminobutyric AcidHEK293 CellsHumansLysineModels, MolecularMolecular StructureMutationProtein BindingProtein Structure, TertiaryQuinineAlanineAmino AcidsAsparagineGABA Agentsgamma-Aminobutyric AcidLysineQuinineReceptors, G-Protein-CoupledTaste Receptors, Type 2ThreonineBitter BlockersBitter Taste ReceptorsCalcium ImagingG Protein-coupled Receptor (GPCR)Molecular ModelingReceptor Structure-FunctionSite-directed Mutagenesis

Identifiers

PMID25059668
PMCPMC4155672
OpenAlexW2046241020

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.