Evidence map›Paper›PMID 25059661›Full record

ArticleThe Journal of biological chemistry2014

Cyanobacteriochrome SesA is a diguanylate cyclase that induces cell aggregation in Thermosynechococcus.

Gen Enomoto, Ryouhei Nomura, Takashi Shimada, Ni-Ni-Win, Rei Narikawa, Masahiko Ikeuchi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 108 citations in OpenAlex.

  1. Article
  2. Review
  3. Cyanobacteriochromes: A Rainbow of Photoreceptors.Annual review of microbiology · 2024
    Review
  4. Red/green cyanobacteriochromes acquire isomerization from phycocyanobilin to phycoviolobilin.Protein science : a publication of the Protein Society · 2024
    Article
  5. Article
  6. Responding to light signals: a comprehensive update on photomorphogenesis in cyanobacteria.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. eLife · 2022
    Article
  14. Article
  15. Protein-chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Gen EnomotoFrom the Department of Life Sciences (Biology), Graduate School of Arts and Sciences, and.
Ryouhei NomuraDepartment of Biological Science, Graduate School of Sciences, University of Tokyo, Komaba 3-8-1, Meguro, Tokyo 153-8902.
Takashi Shimadathe Life Science Research Center, Shimadzu Corp., 3-1 Kanda-Nishikicho, Chiyoda-ku, Tokyo 108-8639, and.
Ni-Ni-WinFrom the Department of Life Sciences (Biology), Graduate School of Arts and Sciences, and.
Rei NarikawaFrom the Department of Life Sciences (Biology), Graduate School of Arts and Sciences, and PRESTO and.
Masahiko IkeuchiFrom the Department of Life Sciences (Biology), Graduate School of Arts and Sciences, and Department of Biological Science, Graduate School of Sciences, University of Tokyo, Komaba 3-8-1, Meguro, Tokyo 153-8902, CREST, Japan Science and Technology Agency (JST), 4-1-8 Honcho Kawaguchi, Saitama 332-0012, Japan mikeuchi@bio.c.u-tokyo.ac.jp.
The University of Tokyo · JPShimadzu (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyanobacteria have unique photoreceptors, cyanobacteriochromes, that show diverse spectral properties to sense near-UV/visible lights. Certain cyanobacteriochromes have been shown to regulate cellular phototaxis or chromatic acclimation of photosynthetic pigments. Some cyanobacteriochromes have output domains involved in bacterial signaling using a second messenger cyclic dimeric GMP (c-di-GMP), but its role in cyanobacteria remains elusive. Here, we characterize the recombinant Tlr0924 from a thermophilic cyanobacterium Thermosynechococcus elongatus, which was expressed in a cyanobacterial system. The protein reversibly photoconverts between blue- and green-absorbing forms, which is consistent with the protein prepared from Escherichia coli, and has diguanylate cyclase activity, which is enhanced 38-fold by blue light compared with green light. Therefore, Tlr0924 is a blue light-activated diguanylate cyclase. The protein's relatively low affinity (10.5 mM) for Mg(2+), which is essential for diguanylate cyclase activity, suggests that Mg(2+) might also regulate c-di-GMP signaling. Finally, we show that blue light irradiation under low temperature is responsible for Thermosynechococcus vulcanus cell aggregation, which is abolished when tlr0924 is disrupted, suggesting that Tlr0924 mediates blue light-induced cell aggregation by producing c-di-GMP. Given our results, we propose the name "sesA (sessility-A)" for tlr0924. This is the first report for cyanobacteriochrome-dependent regulation of a sessile/planktonic lifestyle in cyanobacteria via c-di-GMP.

Indexed as

Bacterial ProteinsBinding, CompetitiveCyanobacteriaCyclic GMPElectrophoresis, Polyacrylamide GelEnzyme ActivationEscherichia coliEscherichia coli ProteinsLightMagnesiumModels, BiologicalMutationPhosphorus-Oxygen LyasesPhotoreceptors, MicrobialProtein BindingRecombinant ProteinsBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPdiguanylate cyclaseEscherichia coli ProteinsMagnesiumPhosphorus-Oxygen LyasesPhotoreceptors, MicrobialRecombinant ProteinsBacterial Signal TransductionCell AggregationCyanobacteriaCyanobacteriochromeCyclic di-GMP (c-di-GMP)MicrobiologyPhotoreceptorSessilityThermosynechococcus

Identifiers

PMID25059661
PMCPMC4155649
OpenAlexW2022917194

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.