Evidence map›Paper›PMID 25059658›Full record

ArticleThe Journal of biological chemistry2014

Mycobacterium tuberculosis DinG is a structure-specific helicase that unwinds G4 DNA: implications for targeting G4 DNA as a novel therapeutic approach.

Roshan Singh Thakur, Ambika Desingu, Shivakumar Basavaraju, Shreelakshmi Subramanya, Desirazu N Rao, Ganesh Nagaraju

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Structure, function and evolution of the bacterial DinG-like proteins.Computational and structural biotechnology journal · 2025
    Review
  4. Article
  5. Combating multidrug-resistance inNAR molecular medicine · 2024
    Article
  6. Article
  7. Genes · 2023
    Article
  8. Article
  9. Genome-Wide Transcriptional Response ofFrontiers in microbiology · 2022
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Antigenic Variation inJournal of bacteriology · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Roshan Singh ThakurFrom the Department of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
Ambika DesinguFrom the Department of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
Shivakumar BasavarajuFrom the Department of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
Shreelakshmi SubramanyaFrom the Department of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
Desirazu N RaoFrom the Department of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
Ganesh NagarajuFrom the Department of Biochemistry, Indian Institute of Science, Bangalore 560012, India nganesh@biochem.iisc.ernet.in.
Indian Institute of Science Bangalore · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The significance of G-quadruplexes and the helicases that resolve G4 structures in prokaryotes is poorly understood. The Mycobacterium tuberculosis genome is GC-rich and contains >10,000 sequences that have the potential to form G4 structures. In Escherichia coli, RecQ helicase unwinds G4 structures. However, RecQ is absent in M. tuberculosis, and the helicase that participates in G4 resolution in M. tuberculosis is obscure. Here, we show that M. tuberculosis DinG (MtDinG) exhibits high affinity for ssDNA and ssDNA translocation with a 5' → 3' polarity. Interestingly, MtDinG unwinds overhangs, flap structures, and forked duplexes but fails to unwind linear duplex DNA. Our data with DNase I footprinting provide mechanistic insights and suggest that MtDinG is a 5' → 3' polarity helicase. Notably, in contrast to E. coli DinG, MtDinG catalyzes unwinding of replication fork and Holliday junction structures. Strikingly, we find that MtDinG resolves intermolecular G4 structures. These data suggest that MtDinG is a multifunctional structure-specific helicase that unwinds model structures of DNA replication, repair, and recombination as well as G4 structures. We finally demonstrate that promoter sequences of M. tuberculosis PE_PGRS2, mce1R, and moeB1 genes contain G4 structures, implying that G4 structures may regulate gene expression in M. tuberculosis. We discuss these data and implicate targeting G4 structures and DinG helicase in M. tuberculosis could be a novel therapeutic strategy for culminating the infection with this pathogen.

Indexed as

G-QuadruplexesAmino Acid SequenceBacterial ProteinsBiocatalysisCircular DichroismDeoxyribonuclease IDNA, CruciformDNA FootprintingDNA HelicasesDNA, Single-StrandedEnzyme InhibitorsHumansModels, GeneticMolecular Sequence DataMycobacterium tuberculosisNucleic Acid ConformationBacterial ProteinsDeoxyribonuclease IDinG protein, Mycobacterium tuberculosisDNA, CruciformDNA HelicasesDNA, Single-StrandedEnzyme InhibitorsDNA Damage ResponseDNA HelicaseDNA-Protein InteractionDNA RecombinationDNA Repair

Identifiers

PMID25059658
PMCPMC4155677
OpenAlexW2050574321

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.