Evidence map›Paper›PMID 25059626›Full record

ArticleBMC developmental biology2014

Surface landmark quantification of embryonic mouse craniofacial morphogenesis.

Christopher J Percival, Rebecca Green, Ralph Marcucio, Benedikt Hallgrímsson

Abstract read
In one paragraph

Article in BMC developmental biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Palatal segment contributions to midfacial anterior-posterior growth.bioRxiv : the preprint server for biology · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Nonlinear gene expression-phenotype relationships contribute to variation and clefting in the A/WySn mouse.Developmental dynamics : an official publication of the American Association of Anatomists · 2019
    Article
  11. Article
  12. Article
  13. Quantifying three-dimensional morphology and RNA from individual embryos.Developmental dynamics : an official publication of the American Association of Anatomists · 2017
    Article
  14. Article
  15. Morphometrics, 3D Imaging, and Craniofacial Development.Current topics in developmental biology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Christopher J Percival
Rebecca Green
Ralph Marcucio
Benedikt HallgrímssonDepartment of Cell Biology and Anatomy, Alberta Children's Hospital Institute for Child and Maternal Health, The McCaig Bone and Joint Institute, University of Calgary, Calgary, AB T2N 4N1, Canada. bhallgri@ucalgary.ca.

Funding

The role of continuous phenotypic variation in structural defects of the faceR01DE019638 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Benedikt Hallgrimsson, Ralph S Marcucio · 2010 to 2026
$7.3M
Developmental mechanisms underlying genotype-phenotype correlationsR01DE021708 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HALLGRIMSSON, BENEDIKT, MARCUCIO, RALPH S · 2011 to 2015
$1.9M
CIHRNIDCR NIH HHS R01 DE019638NIDCR NIH HHS R01-DE021708NIDCR NIH HHS R01-DE19638
6 · The paper itself

Abstract

backgroundMorphometric quantification of subtle craniofacial variation in studies of experimentally modified embryonic mice has proved valuable in determining the effects of developmental perturbations on craniofacial morphogenesis. The direct comparison of landmark coordinate data from embryos of many different mouse strains and mouse models can advance our understanding of the bases for craniofacial variation. We propose a standard set of craniofacial surface landmarks, for use with embryonic day (E) 10.5-12.5 mice, to serve as the foundation for this type of data compilation and analysis. We quantify the intra- and inter-observer landmark placement variation associated with each landmark and determine how the results of a simple ontogenetic analysis might be influenced by selection of landmark set.

resultsIntraobserver landmark placement error for experienced landmarkers generally remains below 0.1 mm, with some landmarks exhibiting higher values at E11.5 and E12.5. Interobserver error tends to increase with embryonic age and those landmarks defined on wide inflections of curves or facial processes exhibit the highest error. Landmarks with highest intra- or inter-observer are identified and we determine that their removal from the dataset does not significantly change the vectors of craniofacial shape change associated with an ontogenetic regression.

conclusionsOur quantification of landmark placement error demonstrates that it is preferable for a single observer to identify all landmark coordinates within a single study and that significant training and experience are necessary before a landmarker can produce data for use in larger meta-analyses. However, we are confident that this standard landmark set, once landmarks with higher error are removed, can serve as a foundation for a comparative dataset of facial morphogenesis across various mouse populations to help identify the developmental bases for phenotypic variation in the craniofacial complex.

Indexed as

MorphogenesisAnatomic LandmarksAnimalsEmbryo, MammalianHeadImage Processing, Computer-AssistedImaging, Three-DimensionalMiceTomography, X-Ray Computed

Identifiers

PMID25059626
PMCPMC4222779

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.