Evidence map›Paper›PMID 25058308›Full record

ArticlePloS one2014

Metagenomic identification of a novel salt tolerance gene from the human gut microbiome which encodes a membrane protein with homology to a brp/blh-family β-carotene 15,15'-monooxygenase.

Eamonn P Culligan, Roy D Sleator, Julian R Marchesi, Colin Hill

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

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  9. Evolutionary Divergence ofFrontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Eamonn P CulliganAlimentary Pharmabiotic Centre, University College Cork, Cork, Ireland; School of Microbiology, University College Cork, Cork, Ireland.
Roy D SleatorAlimentary Pharmabiotic Centre, University College Cork, Cork, Ireland; Department of Biological Sciences, Cork Institute of Technology, Cork, Ireland.
Julian R MarchesiAlimentary Pharmabiotic Centre, University College Cork, Cork, Ireland; Cardiff School of Biosciences, Cardiff University, Cardiff, United Kingdom; Department of Hepatology and Gastroenterology, Imperial College London, London, United Kingdom.
Colin HillAlimentary Pharmabiotic Centre, University College Cork, Cork, Ireland; School of Microbiology, University College Cork, Cork, Ireland.
University College Cork · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human gut microbiome consists of at least 3 million non-redundant genes, 150 times that of the core human genome. Herein, we report the identification and characterisation of a novel stress tolerance gene from the human gut metagenome. The locus, assigned brpA, encodes a membrane protein with homology to a brp/blh-family β-carotene monooxygenase. Cloning and heterologous expression of brpA in Escherichia coli confers a significant salt tolerance phenotype. Furthermore, when cultured in the presence of exogenous β-carotene, cell pellets adopt a red/orange pigmentation indicating the incorporation of carotenoids in the cell membrane.

Indexed as

Salt ToleranceBacteriaBacterial Proteinsbeta-Carotene 15,15'-MonooxygenaseCloning, MolecularGastrointestinal TractHumansMembrane ProteinsMetagenomicsMolecular Sequence DataSequence Analysis, DNABacterial Proteinsbeta-Carotene 15,15'-MonooxygenaseMembrane Proteins

Identifiers

PMID25058308
PMCPMC4110020
OpenAlexW2071120288

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.