Evidence map›Paper›PMID 25058114›Full record

ArticlePloS one2014

Aureochrome 1 illuminated: structural changes of a transcription factor probed by molecular spectroscopy.

Silke Kerruth, Kenichi Ataka, Daniel Frey, Ilme Schlichting, Joachim Heberle

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Silke KerruthExperimental Molecular Biophysics, Freie Universität Berlin, Berlin, Germany.
Kenichi AtakaExperimental Molecular Biophysics, Freie Universität Berlin, Berlin, Germany.
Daniel FreyBiomolecular Mechanisms, Max Planck Institut for Medical Research, Heidelberg, Germany.
Ilme SchlichtingBiomolecular Mechanisms, Max Planck Institut for Medical Research, Heidelberg, Germany.
Joachim HeberleExperimental Molecular Biophysics, Freie Universität Berlin, Berlin, Germany.
Freie Universität Berlin · DEMax Planck Institute for Medical Research · DEMax Planck Society · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aureochrome 1 from Vaucheria frigida is a recently identified blue-light receptor that acts as a transcription factor. The protein comprises a photosensitive light-, oxygen- and voltage-sensitive (LOV) domain and a basic zipper (bZIP) domain that binds DNA rendering aureochrome 1 a prospective optogenetic tool. Here, we studied the photoreaction of full-length aureochrome 1 by molecular spectroscopy. The kinetics of the decay of the red-shifted triplet state and the blue-shifted signaling state were determined by time-resolved UV/Vis spectroscopy. It is shown that the presence of the bZIP domain further prolongs the lifetime of the LOV390 signaling state in comparison to the isolated LOV domain whereas bound DNA does not influence the photocycle kinetics. The light-dark Fourier transform infrared (FTIR) difference spectrum shows the characteristic features of the flavin mononucleotide chromophore except that the S-H stretching vibration of cysteine 254, which is involved in the formation of the thio-adduct state, is significantly shifted to lower frequencies compared to other LOV domains. The presence of the target DNA influences the light-induced FTIR difference spectrum of aureochrome 1. Vibrational bands that can be assigned to arginine and lysine side chains as well to the phosphate backbone, indicate crucial changes in interactions between transcription factor and DNA.

Indexed as

Algal ProteinsBinding SitesCryptochromesDNAKineticsModels, MolecularProtein Structure, SecondarySpectroscopy, Fourier Transform InfraredStructural Homology, ProteinTranscription FactorsAlgal ProteinsCryptochromesDNATranscription Factors

Identifiers

PMID25058114
PMCPMC4110000
OpenAlexW1972521272

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.