Evidence map›Paper›PMID 25058002›Full record

ArticleNature communications2014

Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells.

Michael Baum, Fabian Erdel, Malte Wachsmuth, Karsten Rippe

Abstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Cytoplasmic crowding acts as a porous medium reducing macromolecule diffusion.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
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  7. Review
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  11. Review
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  14. Review
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  18. Review
  19. Article
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30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Michael BaumDeutsches Krebsforschungszentrum (DKFZ) and BioQuant, Research Group Genome Organization and Function, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.
Fabian ErdelDeutsches Krebsforschungszentrum (DKFZ) and BioQuant, Research Group Genome Organization and Function, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.
Malte WachsmuthEuropean Molecular Biology Laboratory, Cell Biology and Biophysics Unit, Meyerhofstr. 1, 69117 Heidelberg, Germany.
Karsten RippeDeutsches Krebsforschungszentrum (DKFZ) and BioQuant, Research Group Genome Organization and Function, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In living cells, most proteins diffuse over distances of micrometres within seconds. Protein translocation is constrained due to the cellular organization into subcompartments that impose diffusion barriers and guide enzymatic activities to their targets. Here, we introduce an approach to retrieve structural features from the scale-dependent mobility of green fluorescent protein monomer and multimers in human cells. We measure protein transport simultaneously between hundreds of positions by multi-scale fluorescence cross-correlation spectroscopy using a line-illuminating confocal microscope. From these data we derive a quantitative model of the intracellular architecture that resembles a random obstacle network for diffusing proteins. This topology partitions the cellular content and increases the dwell time of proteins in their local environment. The accessibility of obstacle surfaces depends on protein size. Our method links multi-scale mobility measurements with a quantitative description of intracellular structure that can be applied to evaluate how drug-induced perturbations affect protein transport and interactions.

Indexed as

Cell LineChromatinChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneCytoplasmCytoskeletonDiffusionGreen Fluorescent ProteinsHumansImage Processing, Computer-AssistedProteinsProtein TransportQuantum DotsRecombinant Fusion ProteinsSpectrometry, FluorescenceSTAT2 Transcription FactorChromatinChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneGreen Fluorescent ProteinsProteinsRecombinant Fusion ProteinsSTAT2 Transcription Factor

Identifiers

PMID25058002
PMCPMC4124875

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.