Evidence map›Paper›PMID 25057768›Full record

ArticlePloS one2014

Role of polycomb group proteins in the DNA damage response--a reassessment.

Hollie Chandler, Harshil Patel, Richard Palermo, Sharon Brookes, Nik Matthews, Gordon Peters

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. SUMO, a small, but powerful, regulator of double-strand break repair.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Hollie ChandlerMolecular Oncology Laboratory, Cancer Research UK London Research Institute, London, United Kingdom.
Harshil PatelBioinformatics and Biostatistics Service, Cancer Research UK London Research Institute, London, United Kingdom.
Richard PalermoMolecular Oncology Laboratory, Cancer Research UK London Research Institute, London, United Kingdom.
Sharon BrookesMolecular Oncology Laboratory, Cancer Research UK London Research Institute, London, United Kingdom.
Nik MatthewsAdvanced Sequencing Facility, Cancer Research UK London Research Institute, London, United Kingdom.
Gordon PetersMolecular Oncology Laboratory, Cancer Research UK London Research Institute, London, United Kingdom.
Cancer Research UK · GB

Funding

Cancer Research UK
6 · The paper itself

Abstract

A growing body of evidence suggests that Polycomb group (PcG) proteins, key regulators of lineage specific gene expression, also participate in the repair of DNA double-strand breaks (DSBs) but evidence for direct recruitment of PcG proteins at specific breaks remains limited. Here we explore the association of Polycomb repressive complex 1 (PRC1) components with DSBs generated by inducible expression of the AsiSI restriction enzyme in normal human fibroblasts. Based on immunofluorescent staining, the co-localization of PRC1 proteins with components of the DNA damage response (DDR) in these primary cells is unconvincing. Moreover, using chromatin immunoprecipitation and deep sequencing (ChIP-seq), which detects PRC1 proteins at common sites throughout the genome, we did not find evidence for recruitment of PRC1 components to AsiSI-induced DSBs. In contrast, the S2056 phosphorylated form of DNA-PKcs and other DDR proteins were detected at a subset of AsiSI sites that are predominantly at the 5' ends of transcriptionally active genes. Our data question the idea that PcG protein recruitment provides a link between DSB repairs and transcriptional repression.

Indexed as

DNA Breaks, Double-StrandedDNA RepairGene Expression RegulationChromatinChromatin ImmunoprecipitationDNA-Activated Protein KinaseDNA Restriction EnzymesFibroblastsHistonesHumansNuclear ProteinsPhosphorylationPolycomb Repressive Complex 1Primary Cell CultureTransgenesChromatinDNA-Activated Protein KinaseDNA Restriction EnzymesHistonesNuclear ProteinsPolycomb Repressive Complex 1PRKDC protein, human

Identifiers

PMID25057768
PMCPMC4109945
OpenAlexW1966134576

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.