Evidence map›Paper›PMID 25057212›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2014

Sox2 regulates cholinergic amacrine cell positioning and dendritic stratification in the retina.

Irene E Whitney, Patrick W Keeley, Ace J St John, Amanda G Kautzman, Jeremy N Kay, Benjamin E Reese

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
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  12. Unique activities of two overlappingLife science alliance · 2023
    Article
  13. Article
  14. Article
  15. Review
  16. Müller Glia-Mediated Retinal Regeneration.Molecular neurobiology · 2021
    Review
  17. Article
  18. Review
  19. The optic nerve lamina region is a neural progenitor cell niche.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Mouse Retinal Cell Atlas: Molecular Identification of over Sixty Amacrine Cell Types.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Irene E WhitneyNeuroscience Research Institute, Department of Molecular, Cellular and Developmental Biology, and.
Patrick W KeeleyNeuroscience Research Institute, Department of Molecular, Cellular and Developmental Biology, and.
Ace J St JohnNeuroscience Research Institute.
Amanda G KautzmanNeuroscience Research Institute, Department of Psychological and Brain Sciences, University of California, Santa Barbara, California 93106, and.
Jeremy N KayDepartments of Neurobiology and Ophthalmology, Duke University Eye Center, Durham, North Carolina 27705.
Benjamin E ReeseNeuroscience Research Institute, Department of Psychological and Brain Sciences, University of California, Santa Barbara, California 93106, and breese@psych.ucsb.edu.
Bioscience Research · USDuke University · USInstitut thématique Génétique, génomique et bioinformatique · FRNeuroscience Institute · IT

Funding

Development of Retinal Bipolar CellsR01EY019968 · NEI · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI REESE, BENJAMIN E · 2010 to 2023
$4.9M
Molecular control of neuronal position during retinal developmentR01EY024694 · NEI · DUKE UNIVERSITY · PI KAY, JEREMY N · 2014 to 2018
$2.0M
ULTRASOUND BIOMICROSCOPY OF SMALL ANIMAL ANATOMY AND PHYSIOLOGY WITH THE vevo 770S10RR022582 · NCRR · UNIVERSITY OF VIRGINIA · PI HOSSACK, JOHN A · 2006 to 2006
$234k
NCRR NIH HHS RR-22582NCRR NIH HHS S10 RR022582NEI NIH HHS EY-19968NEI NIH HHS R01 EY019968NEI NIH HHS R01 EY024694
6 · The paper itself

Abstract

The retina contains two populations of cholinergic amacrine cells, one positioned in the ganglion cell layer (GCL) and the other in the inner nuclear layer (INL), that together comprise ∼1/2 of a percent of all retinal neurons. The present study examined the genetic control of cholinergic amacrine cell number and distribution between these two layers. The total number of cholinergic amacrine cells was quantified in the C57BL/6J and A/J inbred mouse strains, and in 25 recombinant inbred strains derived from them, and variations in their number and ratio (GCL/INL) across these strains were mapped to genomic loci. The total cholinergic amacrine cell number was found to vary across the strains, from 27,000 to 40,000 cells, despite little variation within individual strains. The number of cells was always lower within the GCL relative to the INL, and the sizes of the two populations were strongly correlated, yet there was variation in their ratio between the strains. Approximately 1/3 of that variation in cell ratio was mapped to a locus on chromosome 3, where Sex determining region Y box 2 (Sox2) was identified as a candidate gene due to the presence of a 6-nucleotide insertion in the protein-coding sequence in C57BL/6J and because of robust and selective expression in cholinergic amacrine cells. Conditionally deleting Sox2 from the population of nascent cholinergic amacrine cells perturbed the normal ratio of cells situated in the GCL versus the INL and induced a bistratifying morphology, with dendrites distributed to both ON and OFF strata within the inner plexiform layer.

Indexed as

Amacrine CellsAnimalsCell CountCells, CulturedCholinergic NeuronsDendritesFemaleMaleMiceMice, 129 StrainMice, Inbred AMice, Inbred C57BLMice, KnockoutMice, TransgenicRetinaSOXB1 Transcription FactorsSox2 protein, mouseSOXB1 Transcription FactorsfatemigrationP2X2QTLstarburstvariant

Identifiers

PMID25057212
PMCPMC4107400
OpenAlexW2046260348

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.