Evidence map›Paper›PMID 25056925›Full record

ArticleChembiochem : a European journal of chemical biology2014

High-throughput bead-based identification of structure-switching aptamer beacons.

Simon G Trevino, Matthew Levy

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Inside the Black Box: What Makes SELEX Better?Molecules (Basel, Switzerland) · 2019
    Review
  3. Key Aspects of Nucleic Acid Library Design for in Vitro Selection.International journal of molecular sciences · 2018
    Review
  4. Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Simon G TrevinoDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461 (USA).
Matthew Levy

Funding

Lectimers: Glycan-anchored scaffold libraries for targeting carbohydrate-bindingR21CA182330 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI LEVY, MATTHEW · 2013 to 2015
$707k
Targeting Cancer Cells with Functionalized Nanoparticle LibrariesR21CA157366 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LEVY, MATTHEW · 2011 to 2013
$517k
NCI NIH HHS R21 CA157366NCI NIH HHS R21 CA182330
6 · The paper itself

Abstract

We describe a new platform to identify structure-switching DNA beacon aptamers, which detect small molecules in a specific manner. By clonally amplifying a DNA library designed to fluoresce in response to binding events onto microbeads, aptamer beacons can be selected by stringent fluorescence-assisted sorting. We validated this method by isolating known and novel anti-steroid aptamers from two separate DNA libraries that were structurally enriched with three-way junctions. Importantly, aptamers were retrieved in only a few (three) rounds of selection by this approach and did not require further optimization, significantly streamlining the process of beacon development.

Indexed as

Aptamers, NucleotideBinding SitesComputational BiologyFluorescenceGene LibraryHigh-Throughput Screening AssaysOligonucleotidesSELEX Aptamer TechniqueSteroidsAptamers, NucleotideOligonucleotidesSteroidsaptamersDNA structuresemulsion PCRmolecular beaconsSELEX

Identifiers

PMID25056925
PMCPMC4161366

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.