Evidence map›Paper›PMID 25056898›Full record

ArticleJournal of virology2014

Molecular characterization of a lizard adenovirus reveals the first atadenovirus with two fiber genes and the first adenovirus with either one short or three long fibers per penton.

Judit J Pénzes, Rosa Menéndez-Conejero, Gabriela N Condezo, Inna Ball, Tibor Papp, Andor Doszpoly, Alberto Paradela, Ana J Pérez-Berná, María López-Sanz, Thanh H Nguyen and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  4. ICTV Virus Taxonomy Profile:The Journal of general virology · 2022
    Article
  5. Adenovirus Structure: What Is New?International journal of molecular sciences · 2021
    Review
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  8. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Judit J PénzesInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Budapest, Hungary.
Rosa Menéndez-ConejeroDepartment of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain NanoBiomedicine Initiative, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.
Gabriela N CondezoDepartment of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain NanoBiomedicine Initiative, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.
Inna BallInstitute for Environmental and Animal Hygiene, University of Hohenheim, Stuttgart, Germany.
Tibor PappInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Budapest, Hungary Institute for Environmental and Animal Hygiene, University of Hohenheim, Stuttgart, Germany.
Andor DoszpolyInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Budapest, Hungary.
Alberto ParadelaDepartment of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.
Ana J Pérez-BernáDepartment of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain NanoBiomedicine Initiative, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.
María López-SanzDepartment of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.
Thanh H NguyenDepartment of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain NanoBiomedicine Initiative, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.
Mark J van RaaijDepartment of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain NanoBiomedicine Initiative, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.ORCID http://orcid.org/0000-0002-4781-1375
Rachel E MarschangInstitute for Environmental and Animal Hygiene, University of Hohenheim, Stuttgart, Germany.
Balázs HarrachInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Budapest, Hungary.
Mária BenkőInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Budapest, Hungary.
Carmen San MartínDepartment of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain NanoBiomedicine Initiative, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain carmen@cnb.csic.es.
Centro Nacional de Biotecnología · ESHungarian Academy of Sciences · HUHUN-REN Veterinary Medical Research Institute · HUUniversity of Hohenheim · DECentre for Agricultural Research · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledAlthough adenoviruses (AdVs) have been found in a wide variety of reptiles, including numerous squamate species, turtles, and crocodiles, the number of reptilian adenovirus isolates is still scarce. The only fully sequenced reptilian adenovirus, snake adenovirus 1 (SnAdV-1), belongs to the Atadenovirus genus. Recently, two new atadenoviruses were isolated from a captive Gila monster (Heloderma suspectum) and Mexican beaded lizards (Heloderma horridum). Here we report the full genomic and proteomic characterization of the latter, designated lizard adenovirus 2 (LAdV-2). The double-stranded DNA (dsDNA) genome of LAdV-2 is 32,965 bp long, with an average G+C content of 44.16%. The overall arrangement and gene content of the LAdV-2 genome were largely concordant with those in other atadenoviruses, except for four novel open reading frames (ORFs) at the right end of the genome. Phylogeny reconstructions and plesiomorphic traits shared with SnAdV-1 further supported the assignment of LAdV-2 to the Atadenovirus genus. Surprisingly, two fiber genes were found for the first time in an atadenovirus. After optimizing the production of LAdV-2 in cell culture, we determined the protein compositions of the virions. The two fiber genes produce two fiber proteins of different sizes that are incorporated into the viral particles. Interestingly, the two different fiber proteins assemble as either one short or three long fiber projections per vertex. Stoichiometry estimations indicate that the long fiber triplet is present at only one or two vertices per virion. Neither triple fibers nor a mixed number of fibers per vertex had previously been reported for adenoviruses or any other virus. IMPORTANCE: Here we show that a lizard adenovirus, LAdV-2, has a penton architecture never observed before. LAdV-2 expresses two fiber proteins-one short and one long. In the virion, most vertices have one short fiber, but a few of them have three long fibers attached to the same penton base. This observation raises new intriguing questions on virus structure. How can the triple fiber attach to a pentameric vertex? What determines the number and location of each vertex type in the icosahedral particle? Since fibers are responsible for primary attachment to the host, this novel architecture also suggests a novel mode of cell entry for LAdV-2. Adenoviruses have a recognized potential in nanobiomedicine, but only a few of the more than 200 types found so far in nature have been characterized in detail. Exploring the taxonomic wealth of adenoviruses should improve our chances to successfully use them as therapeutic tools.

Indexed as

Genome, ViralAmino Acid SequenceAnimalsAtadenovirusBase CompositionBase SequenceCapsid ProteinsDNADNA, ViralGene ExpressionLizardsMolecular Sequence DataOpen Reading FramesPhylogenyVirionCapsid ProteinsDNADNA, Viralhexon capsid protein, Adenovirus

Identifiers

PMID25056898
PMCPMC4178792
OpenAlexW2148910592

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.