Evidence map›Paper›PMID 25056448›Full record

ArticleGenes and immunity2014

Diversity in the preimmune immunoglobulin repertoire of SHR lines susceptible and resistant to end-organ injury.

M L Gonzalez-Garay, S M Cranford, M C Braun, P A Doris

Open access · bronzeAbstract read
In one paragraph

Article in Genes and immunity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Journal of the American Heart Association · 2020
    Article
  6. Article
  7. Adaptive Immunity in Hypertension.Current hypertension reports · 2019
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

M L Gonzalez-GarayInstitute of Molecular Medicine, University of Texas Health Science Center at Houston, Houston, TX, USA.ORCID 0000000334120353
S M CranfordInstitute of Molecular Medicine, University of Texas Health Science Center at Houston, Houston, TX, USA.
M C BraunInstitute of Molecular Medicine, University of Texas Health Science Center at Houston, Houston, TX, USA.
P A DorisInstitute of Molecular Medicine, University of Texas Health Science Center at Houston, Houston, TX, USA.
The University of Texas Health Science Center at Houston · US

Funding

Hypertensive Renal InjuryR01DK081866 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI DORIS, PETER A · 2009 to 2017
$2.9M
HNF1 transcriptional control of renal oxidative stressR01DK069632 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI DORIS, PETER A · 2005 to 2009
$1.4M
Hypertensive Renal InjuryR56DK081866 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI DORIS, PETER A · 2012 to 2012
$100k
NIDDK NIH HHS R01 DK069632NIDDK NIH HHS R01DK069632-05NIDDK NIH HHS R01 DK081866NIDDK NIH HHS R01DK081866NIDDK NIH HHS R56 DK081866
6 · The paper itself

Abstract

We used next-generation sequencing to identify immunoglobulin heavy chain (IGH) genetic variation in two closely related hypertensive rat lines that differ in susceptibility to end-organ disease (SHR-A3 and SHR-B2). The two SHR lines differ extensively at the IGH locus from the rat reference genome sequence and from each other, creating 306 sequence unique IGH genes. Compared with IGH genes mapped in the rat reference genome sequence, 98 are null gene alleles (31 are null in both SHR lines, 45 are null in SHR-A3 only and 23 are null in SHR-B2 only). Of the 306 divergent gene sequences, 126 result in amino acid substitution and, among these, SHR-A3 and SHR-B2 differ from one another at the amino acid level in 96 segments. Twelve pseudogenes in the rat reference genome sequence had changes displacing the stop codon and creating probable functional genes in either or both SHR-A3 and SHR-B2. A further five alleles that encoded functional rat reference genome sequence genes or open reading frames were converted to pseudogenes in either or both SHR-A3 and SHR-B2. These studies reveal that the preimmune immunoglobulin repertoire is highly divergent among SHR lines differing in end-organ injury susceptibility and this may modify immune mechanisms in hypertensive renal injury.

Indexed as

Genetic VariationAllelesAmino Acid SequenceAnimalsBase SequenceChromosome MappingGene FrequencyGenes, Immunoglobulin Heavy ChainGenetic Predisposition to DiseaseGenome-Wide Association StudyHaplotypesHigh-Throughput Nucleotide SequencingHypertensionMolecular Sequence DataPolymorphism, Single NucleotideRats, Inbred SHR

Identifiers

PMID25056448
PMCPMC4257902
OpenAlexW2021646810

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.