Evidence map›Paper›PMID 25054982›Full record

ArticleArquivos de neuro-psiquiatria2014

Cerebrospinal fluid can be used for HIV genotyping when it fails in blood.

Indianara Rotta, Sonia Mara Raboni, Cléa Elisa Lopes Ribeiro, Maristela Riedel, Maria da Graça Winhescki, Davey M Smith, Ronald J Ellis, Sérgio Monteiro de Almeida

Open access · goldAbstract read
In one paragraph

Article in Arquivos de neuro-psiquiatria, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Indianara RottaLaboratório de Virologia, Hospital de Clínicas, Universidade Federal do Paraná, Curitiba, PR, Brazil.
Sonia Mara RaboniServiço de Infectologia, Hospital de Clínicas, Universidade Federal do Paraná, Curitiba, PR, Brazil.
Cléa Elisa Lopes RibeiroServiço de Infectologia, Hospital de Clínicas, Universidade Federal do Paraná, Curitiba, PR, Brazil.
Maristela RiedelLaboratório da Secretaria Municipal de Saúde, Curitiba, PR, Brazil.
Maria da Graça WinhesckiLaboratório da Secretaria Municipal de Saúde, Curitiba, PR, Brazil.
Davey M SmithUniversity of California, San Diego, CA, USA.
Ronald J EllisUniversity of California, San Diego, CA, USA.
Sérgio Monteiro de AlmeidaLaboratório de Virologia, Hospital de Clínicas, Universidade Federal do Paraná, Curitiba, PR, Brazil.
Universidade Federal do Paraná · BRSecretaria Municipal de Saúde · BRUniversity of California, San Diego · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Maile Ann Young Karris · 1994 to 2026
$78.4M
STRUCTURAL NEUROIMAGING COREP30MH062512 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAVID J MOORE · 2001 to 2026
$50.4M
HIV Clade on Cognitive and Neurological Disorders BrazilR21MH076651 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLIS, RONALD J. · 2006 to 2007
$317k
NIAID NIH HHS P30 AI036214NIMH NIH HHS P30 MH062512NIMH NIH HHS R21 MH076651NIMH NIH HHS R21 MH76651
6 · The paper itself

Abstract

Blood plasma specimens are the clinical standard for HIV-1 pol gene genotyping from viral populations; however, it is not always successful, often from low viral loads or the presence of polymerase chain reaction (PCR) inhibitors. Objective To describe the successful of HIV-1 genotyping in two samples of cerebrospinal fluid (CSF), after genotype procedures failed from blood. Method Two HIV-infected patients enrolled in a neurocognitive research study were evaluated when standard HIV-1 genotyping failed from blood plasma samples. Genotyping was performed using the commercial system TRUGENE HIV-1 Genotyping Kit and the OpenGene DNA Sequencing System (Siemens Healthcare Diagnostics, Tarrytown, NY, USA). Results CSF genotyping was performed via the same commercial platform and was successful in both cases. Conclusion This report demonstrates that CSF could be used as an alternate clinical specimen for HIV-1 genotyping when it fails from blood.

Indexed as

AdultBase SequenceGenotyping TechniquesHIV-1HIV InfectionsHumansMaleMiddle AgedPolymerase Chain ReactionReproducibility of ResultsRNA, ViralViral LoadRNA, Viral

Identifiers

PMID25054982
PMCPMC4139176
OpenAlexW2044259093

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.