Evidence map›Paper›PMID 25053919›Full record

ReviewBreeding science2014

mPing: The bursting transposon.

Ken Naito, Yuki Monden, Kanako Yasuda, Hiroki Saito, Yutaka Okumoto

Open access · diamondAbstract readReview
In one paragraph

Review in Breeding science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Comprehensive survey of transposonFrontiers in plant science · 2022
    Article
  5. Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Ken NaitoGenetic Resource Center, National Institute of Agrobiological Sciences , 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602 , Japan.
Yuki MondenGraduate School of Environmental and life Science, Okayama University , 3-1-1 Tsushima-naka, Kita, Okayama 700-8530 , Japan.
Kanako YasudaDepartment of Agriculture, Kyoto University , Kitashirakawa Oiwake, Sakyo, Kyoto 606-8502 , Japan.
Hiroki SaitoDepartment of Agriculture, Kyoto University , Kitashirakawa Oiwake, Sakyo, Kyoto 606-8502 , Japan.
Yutaka OkumotoDepartment of Agriculture, Kyoto University , Kitashirakawa Oiwake, Sakyo, Kyoto 606-8502 , Japan.
Kyoto University · JPInstitute of Agrobiological Sciences · JPOkayama University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Though transposable elements (TEs) have been considered as an efficient source of evolution, it has never been possible to test this hypothesis because most of TE insertions had occurred millions of years ago, or because currently active TEs have very few copies in a host genome. However, mPing, the first active DNA transposon in rice, was revealed to hold a key to answer this question. mPing has attained high copy numbers and still retained very high activity in a traditional rice strain, which enabled direct observation of behavior and impact of a bursting TE. A comprehensive analysis of mPing insertion sites has revealed it avoids exons but prefers promoter regions and thus moderately affects transcription of neighboring genes. Some of the mPing insertions have introduced possibly useful expression profile to adjacent genes that indicated TE's potential in de novo formation of gene regulatory network.

Indexed as

gene regulationgenome evolutionOryza sativatransposable element

Identifiers

PMID25053919
PMCPMC4065317
OpenAlexW2061092169

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.