Evidence map›Paper›PMID 25053843›Full record

ArticleNucleic acids research2014

dREAM co-operates with insulator-binding proteins and regulates expression at divergently paired genes.

Michael Korenjak, Eunjeong Kwon, Robert T Morris, Endre Anderssen, Arnaud Amzallag, Sridhar Ramaswamy, Nicholas J Dyson

Abstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Binding profiles for 961Genome research · 2024
    Article
  4. Article
  5. Binding profiles for 954 Drosophila andbioRxiv : the preprint server for biology · 2024
    Article
  6. A cohesin traffic pattern genetically linked to gene regulation.Nature structural & molecular biology · 2022
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. TheBiology open · 2017
    Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Michael KorenjakMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA 02129, USA.
Eunjeong KwonMassachusetts General Hospital, Cutaneous Biology Research Center, Charlestown, MA 02129, USA.
Robert T MorrisMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA 02129, USA.
Endre AnderssenMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA 02129, USA.
Arnaud AmzallagMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA 02129, USA.
Sridhar RamaswamyMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA 02129, USA.
Nicholas J DysonMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA 02129, USA Dyson@helix.mgh.harvard.edu.

Funding

The E2F/RBF networkR01GM053203 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI DYSON, NICHOLAS J · 1995 to 2010
$4.2M
MUTAGENESIS OF THE PRB POCKET DOMAINR01CA064402 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI DYSON, NICHOLAS J · 1994 to 2015
$4.1M
NCI NIH HHS R01 CA064402NCI NIH HHS R01CA64402NIGMS NIH HHS GM053203
6 · The paper itself

Abstract

dREAM complexes represent the predominant form of E2F/RBF repressor complexes in Drosophila. dREAM associates with thousands of sites in the fly genome but its mechanism of action is unknown. To understand the genomic context in which dREAM acts we examined the distribution and localization of Drosophila E2F and dREAM proteins. Here we report a striking and unexpected overlap between dE2F2/dREAM sites and binding sites for the insulator-binding proteins CP190 and Beaf-32. Genetic assays show that these components functionally co-operate and chromatin immunoprecipitation experiments on mutant animals demonstrate that dE2F2 is important for association of CP190 with chromatin. dE2F2/dREAM binding sites are enriched at divergently transcribed genes, and the majority of genes upregulated by dE2F2 depletion represent the repressed half of a differentially expressed, divergently transcribed pair of genes. Analysis of mutant animals confirms that dREAM and CP190 are similarly required for transcriptional integrity at these gene pairs and suggest that dREAM functions in concert with CP190 to establish boundaries between repressed/activated genes. Consistent with the idea that dREAM co-operates with insulator-binding proteins, genomic regions bound by dREAM possess enhancer-blocking activity that depends on multiple dREAM components. These findings suggest that dREAM functions in the organization of transcriptional domains.

Indexed as

Gene Expression RegulationTranscription, GeneticAnimalsBinding SitesDNADNA-Binding ProteinsDrosophilaDrosophila ProteinsE2F2 Transcription FactorEnhancer Elements, GeneticEye ProteinsMicrotubule-Associated ProteinsMutationNuclear ProteinsTranscription FactorsBEAF-32 protein, DrosophilaCP190 protein, DrosophilaDNADNA-Binding ProteinsDrosophila ProteinsE2f1 protein, DrosophilaE2f2 protein, DrosophilaE2F2 Transcription FactorEye ProteinsMicrotubule-Associated ProteinsNuclear ProteinsTranscription Factors

Identifiers

PMID25053843
PMCPMC4132727

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.