ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2014
Draft sequencing and analysis of the genome of pufferfish Takifugu flavidus.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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12 citing papers in PubMed.
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- Advances in biotechnology and breeding innovations in China's marine aquaculture.Advanced biotechnology · 2024Review
- Decoding the fish genome opens a new era in important trait research and molecular breeding in China.Science China. Life sciences · 2024Review
- Anti-Melanogenic Effects ofMarine drugs · 2024Article
- Symmetric subgenomes and balanced homoeolog expression stabilize the establishment of allopolyploidy in cyprinid fish.BMC biology · 2022Article
- A Novel Angiotensin-I-Converting Enzyme (ACE) Inhibitory Peptide fromMarine drugs · 2021Article
- Genome Analysis ofFrontiers in genetics · 2021Article
- Chromosome genome assembly and annotation of the yellowbelly pufferfish with PacBio and Hi-C sequencing data.Scientific data · 2019Article
- Nucleotide composition of transposable elements likely contributes to AT/GC compositional homogeneity of teleost fish genomes.Mobile DNA · 2019Article
- Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments.BMC genomics · 2018Article
- Evolution of the duplicated intracellular lipid-binding protein genes of teleost fishes.Molecular genetics and genomics : MGG · 2017Review
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7 authors.
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Abstract
The pufferfish Takifugu flavidus is an important economic species due to its outstanding flavour and high market value. It has been regarded as an excellent model of genetic study for decades as well. In the present study, three mate-pair libraries of T. flavidus genome were sequenced by the SOLiD 4 next-generation sequencing platform, and the draft genome was constructed with the short reads using an assisted assembly strategy. The draft consists of 50,947 scaffolds with an N50 value of 305.7 kb, and the average GC content was 45.2%. The combined length of repetitive sequences was 26.5 Mb, which accounted for 6.87% of the genome, indicating that the compactness of T. flavidus genome was approximative with that of T. rubripes genome. A total of 1,253 non-coding RNA genes and 30,285 protein-encoding genes were assigned to the genome. There were 132,775 and 394 presumptive genes playing roles in the colour pattern variation, the relatively slow growth and the lipid metabolism, respectively. Among them, genes involved in the microtubule-dependent transport system, angiogenesis, decapentaplegic pathway and lipid mobilization were significantly expanded in the T. flavidus genome. This draft genome provides a valuable resource for understanding and improving both fundamental and applied research with pufferfish in the future.
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